miRNA display CGI


Results 21 - 40 of 129 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10708 5' -55.6 NC_002794.1 + 58543 0.66 0.944825
Target:  5'- cGCCGCGGCGCGcgcgcuGcUGGCGcGCUGc-- -3'
miRNA:   3'- cCGGCGUCGUGU------CuAUCGC-CGACuuc -5'
10708 5' -55.6 NC_002794.1 + 60512 0.66 0.940286
Target:  5'- cGUCGaCGGCACGGAggGGCuGgUGGAGa -3'
miRNA:   3'- cCGGC-GUCGUGUCUa-UCGcCgACUUC- -5'
10708 5' -55.6 NC_002794.1 + 61163 0.71 0.707385
Target:  5'- aGCgCGCGGUcCGGAUcGGCGGCUGGu- -3'
miRNA:   3'- cCG-GCGUCGuGUCUA-UCGCCGACUuc -5'
10708 5' -55.6 NC_002794.1 + 63451 0.66 0.935513
Target:  5'- cGGCCGCGGCGgCGacGAUgacgacgaGGCGGCg---- -3'
miRNA:   3'- -CCGGCGUCGU-GU--CUA--------UCGCCGacuuc -5'
10708 5' -55.6 NC_002794.1 + 66866 0.73 0.606191
Target:  5'- aGGCCGCGGCGu-----GCGGCUGAGc -3'
miRNA:   3'- -CCGGCGUCGUgucuauCGCCGACUUc -5'
10708 5' -55.6 NC_002794.1 + 70069 0.67 0.901923
Target:  5'- cGGCCGCAGcCGCAGcaaGGCGacgcaggccgcGCaGAAGa -3'
miRNA:   3'- -CCGGCGUC-GUGUCua-UCGC-----------CGaCUUC- -5'
10708 5' -55.6 NC_002794.1 + 70273 0.68 0.852391
Target:  5'- aGGCCGCgaaGGC-CGGAgAGCaGGCcGggGg -3'
miRNA:   3'- -CCGGCG---UCGuGUCUaUCG-CCGaCuuC- -5'
10708 5' -55.6 NC_002794.1 + 70677 0.67 0.919778
Target:  5'- cGCCGCGGCGguGAcguccugucGCcGCUGggGg -3'
miRNA:   3'- cCGGCGUCGUguCUau-------CGcCGACuuC- -5'
10708 5' -55.6 NC_002794.1 + 72419 0.73 0.636703
Target:  5'- cGCCGCGGCGgAGGaggAGCcGGCgGAGGg -3'
miRNA:   3'- cCGGCGUCGUgUCUa--UCG-CCGaCUUC- -5'
10708 5' -55.6 NC_002794.1 + 75374 0.66 0.949132
Target:  5'- cGCCGCGGC-CGGc-GGCGGCg---- -3'
miRNA:   3'- cCGGCGUCGuGUCuaUCGCCGacuuc -5'
10708 5' -55.6 NC_002794.1 + 76536 0.67 0.888866
Target:  5'- cGGCCGCGGCGCcGAc-GCGGUc---- -3'
miRNA:   3'- -CCGGCGUCGUGuCUauCGCCGacuuc -5'
10708 5' -55.6 NC_002794.1 + 80407 0.72 0.667182
Target:  5'- cGCCGCGGCcCAGGUGGCgccgGGC-GggGc -3'
miRNA:   3'- cCGGCGUCGuGUCUAUCG----CCGaCuuC- -5'
10708 5' -55.6 NC_002794.1 + 87058 0.7 0.783269
Target:  5'- gGGCCGgguccuguagcgaCAGCACGGugcaggccgGGCGGgUGggGg -3'
miRNA:   3'- -CCGGC-------------GUCGUGUCua-------UCGCCgACuuC- -5'
10708 5' -55.6 NC_002794.1 + 87118 0.67 0.888866
Target:  5'- gGGUgGgGGUGCAGGccgGGCGGgUGggGg -3'
miRNA:   3'- -CCGgCgUCGUGUCUa--UCGCCgACuuC- -5'
10708 5' -55.6 NC_002794.1 + 87160 0.67 0.888866
Target:  5'- gGGUgGgGGUGCAGGccgGGCGGgUGggGg -3'
miRNA:   3'- -CCGgCgUCGUGUCUa--UCGCCgACuuC- -5'
10708 5' -55.6 NC_002794.1 + 87202 0.67 0.888866
Target:  5'- gGGUgGgGGUGCAGGccgGGCGGgUGggGg -3'
miRNA:   3'- -CCGgCgUCGUGUCUa--UCGCCgACuuC- -5'
10708 5' -55.6 NC_002794.1 + 87244 0.67 0.888866
Target:  5'- gGGUgGgGGUGCAGGccgGGCGGgUGggGg -3'
miRNA:   3'- -CCGgCgUCGUGUCUa--UCGCCgACuuC- -5'
10708 5' -55.6 NC_002794.1 + 88079 0.67 0.901923
Target:  5'- gGGCCGCGGUuugaACGGGgcGUGGUgaUGAGc -3'
miRNA:   3'- -CCGGCGUCG----UGUCUauCGCCG--ACUUc -5'
10708 5' -55.6 NC_002794.1 + 89714 0.66 0.944825
Target:  5'- cGCCGCGGUGCcGAUccgcGCGGCgucgguccuUGggGa -3'
miRNA:   3'- cCGGCGUCGUGuCUAu---CGCCG---------ACuuC- -5'
10708 5' -55.6 NC_002794.1 + 91597 0.66 0.944825
Target:  5'- uGGCCGCuGGUGCGc---GCGGCcGAGGg -3'
miRNA:   3'- -CCGGCG-UCGUGUcuauCGCCGaCUUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.