miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10708 5' -55.6 NC_002794.1 + 21900 0.7 0.774964
Target:  5'- cGGCCuGCGuCGguGGUGGCGGC-GGAGa -3'
miRNA:   3'- -CCGG-CGUcGUguCUAUCGCCGaCUUC- -5'
10708 5' -55.6 NC_002794.1 + 23947 0.76 0.432412
Target:  5'- cGGCCGCGGCGCAcuuggcuccGAgccAGCGGC-GAGGc -3'
miRNA:   3'- -CCGGCGUCGUGU---------CUa--UCGCCGaCUUC- -5'
10708 5' -55.6 NC_002794.1 + 30745 0.73 0.606191
Target:  5'- uGGCCGCGGC-----UGGCGcGCUGGAGg -3'
miRNA:   3'- -CCGGCGUCGugucuAUCGC-CGACUUC- -5'
10708 5' -55.6 NC_002794.1 + 32310 0.66 0.925259
Target:  5'- cGGCCGC-GC-CGGcc-GCGGCcGGAGa -3'
miRNA:   3'- -CCGGCGuCGuGUCuauCGCCGaCUUC- -5'
10708 5' -55.6 NC_002794.1 + 32875 0.67 0.91406
Target:  5'- gGGCgGCGGCgGCGGc-GGCGGCaucaUGGAGc -3'
miRNA:   3'- -CCGgCGUCG-UGUCuaUCGCCG----ACUUC- -5'
10708 5' -55.6 NC_002794.1 + 33482 0.66 0.944825
Target:  5'- cGCUGCAGCugggcaacauGCAGA-AGCuGCUGGAc -3'
miRNA:   3'- cCGGCGUCG----------UGUCUaUCGcCGACUUc -5'
10708 5' -55.6 NC_002794.1 + 37579 0.69 0.819633
Target:  5'- aGCCGUcGaACAGAUAGCGGUcgcgaUGGAGc -3'
miRNA:   3'- cCGGCGuCgUGUCUAUCGCCG-----ACUUC- -5'
10708 5' -55.6 NC_002794.1 + 37748 0.7 0.765616
Target:  5'- cGGCgGCGGCGCGGcgGcGCcGGCgGGAGc -3'
miRNA:   3'- -CCGgCGUCGUGUCuaU-CG-CCGaCUUC- -5'
10708 5' -55.6 NC_002794.1 + 38465 0.7 0.756152
Target:  5'- cGGCCGCGGCGCGcccuuuaugGGCGGagGAAGc -3'
miRNA:   3'- -CCGGCGUCGUGUcua------UCGCCgaCUUC- -5'
10708 5' -55.6 NC_002794.1 + 47791 0.72 0.687374
Target:  5'- cGGCCGCAGUACAcGGUcucggcgaacaGGCGGaC-GAGGg -3'
miRNA:   3'- -CCGGCGUCGUGU-CUA-----------UCGCC-GaCUUC- -5'
10708 5' -55.6 NC_002794.1 + 48266 0.68 0.874914
Target:  5'- -cCCGCAGCACAGGcAG-GGCUccgccguccGAAGg -3'
miRNA:   3'- ccGGCGUCGUGUCUaUCgCCGA---------CUUC- -5'
10708 5' -55.6 NC_002794.1 + 48564 0.66 0.940286
Target:  5'- cGGCCGCccGUcCAGAUgGGCGaGCcGGAGg -3'
miRNA:   3'- -CCGGCGu-CGuGUCUA-UCGC-CGaCUUC- -5'
10708 5' -55.6 NC_002794.1 + 49061 0.66 0.935513
Target:  5'- gGGCgCGCAGCACGacucGCGGUaccaGAAGa -3'
miRNA:   3'- -CCG-GCGUCGUGUcuauCGCCGa---CUUC- -5'
10708 5' -55.6 NC_002794.1 + 49756 0.66 0.923639
Target:  5'- aGGCCGCucGCACgcgcucgucuccccGGA-GGCGGUUGGGc -3'
miRNA:   3'- -CCGGCGu-CGUG--------------UCUaUCGCCGACUUc -5'
10708 5' -55.6 NC_002794.1 + 50586 0.66 0.925259
Target:  5'- cGCgGCGGCugGG-UGGCcGGCgccgGggGg -3'
miRNA:   3'- cCGgCGUCGugUCuAUCG-CCGa---CuuC- -5'
10708 5' -55.6 NC_002794.1 + 55270 0.71 0.736907
Target:  5'- aGCCGgGGgGCGGcgGUGGCGGCgacGAGGg -3'
miRNA:   3'- cCGGCgUCgUGUC--UAUCGCCGa--CUUC- -5'
10708 5' -55.6 NC_002794.1 + 55301 0.69 0.811003
Target:  5'- cGGCgGCGGCgucgcgGCGGGcgcgGGCGGCUuccGAGGa -3'
miRNA:   3'- -CCGgCGUCG------UGUCUa---UCGCCGA---CUUC- -5'
10708 5' -55.6 NC_002794.1 + 55949 0.67 0.888866
Target:  5'- uGCCGCAGCaggaACGGGUAGUaGUcGAGGu -3'
miRNA:   3'- cCGGCGUCG----UGUCUAUCGcCGaCUUC- -5'
10708 5' -55.6 NC_002794.1 + 56325 0.71 0.7173
Target:  5'- cGGCCGUGGC-CGGcgAcGCGGC-GAAGa -3'
miRNA:   3'- -CCGGCGUCGuGUCuaU-CGCCGaCUUC- -5'
10708 5' -55.6 NC_002794.1 + 57595 0.66 0.925259
Target:  5'- aGGCCGC-GCGCguggccaccgAGAaGGCGGCcGAc- -3'
miRNA:   3'- -CCGGCGuCGUG----------UCUaUCGCCGaCUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.