miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10708 5' -55.6 NC_002794.1 + 187236 1.1 0.003116
Target:  5'- uGGCCGCAGCACAGAUAGCGGCUGAAGu -3'
miRNA:   3'- -CCGGCGUCGUGUCUAUCGCCGACUUC- -5'
10708 5' -55.6 NC_002794.1 + 101264 0.8 0.271518
Target:  5'- gGGCCGCccccGGCGCcGGUGGCGGCggcggGGAGg -3'
miRNA:   3'- -CCGGCG----UCGUGuCUAUCGCCGa----CUUC- -5'
10708 5' -55.6 NC_002794.1 + 191870 0.78 0.349151
Target:  5'- aGGCCgGCGGCGgAGggGGCGGCgGAGGc -3'
miRNA:   3'- -CCGG-CGUCGUgUCuaUCGCCGaCUUC- -5'
10708 5' -55.6 NC_002794.1 + 156414 0.78 0.356945
Target:  5'- cGGCCGCGGcCACGGccGGCGGgUGAGa -3'
miRNA:   3'- -CCGGCGUC-GUGUCuaUCGCCgACUUc -5'
10708 5' -55.6 NC_002794.1 + 142319 0.77 0.389326
Target:  5'- aGGCgGCGGCGCAGGcggcggaGGCGGCgGAGGc -3'
miRNA:   3'- -CCGgCGUCGUGUCUa------UCGCCGaCUUC- -5'
10708 5' -55.6 NC_002794.1 + 23947 0.76 0.432412
Target:  5'- cGGCCGCGGCGCAcuuggcuccGAgccAGCGGC-GAGGc -3'
miRNA:   3'- -CCGGCGUCGUGU---------CUa--UCGCCGaCUUC- -5'
10708 5' -55.6 NC_002794.1 + 94050 0.76 0.450409
Target:  5'- cGGCgGCGGUGCGGG-GGCGGCgGggGg -3'
miRNA:   3'- -CCGgCGUCGUGUCUaUCGCCGaCuuC- -5'
10708 5' -55.6 NC_002794.1 + 143211 0.76 0.45956
Target:  5'- cGGUCcCAGCGCAGGUGGCGGaaccacagGAAGa -3'
miRNA:   3'- -CCGGcGUCGUGUCUAUCGCCga------CUUC- -5'
10708 5' -55.6 NC_002794.1 + 142214 0.75 0.497109
Target:  5'- cGGCgGCAGCggcgguGCGGggAGCGGCgGAGGc -3'
miRNA:   3'- -CCGgCGUCG------UGUCuaUCGCCGaCUUC- -5'
10708 5' -55.6 NC_002794.1 + 140024 0.75 0.497109
Target:  5'- aGGCCGCGGCccccGCGGGcGGCGGgaGAc- -3'
miRNA:   3'- -CCGGCGUCG----UGUCUaUCGCCgaCUuc -5'
10708 5' -55.6 NC_002794.1 + 128804 0.74 0.565807
Target:  5'- -uCCGCGGCACGcguGGUGGCGGCUcGGAc -3'
miRNA:   3'- ccGGCGUCGUGU---CUAUCGCCGA-CUUc -5'
10708 5' -55.6 NC_002794.1 + 91761 0.74 0.565807
Target:  5'- gGGCgGCAccGCGCAGGacgGGCuGCUGAAGg -3'
miRNA:   3'- -CCGgCGU--CGUGUCUa--UCGcCGACUUC- -5'
10708 5' -55.6 NC_002794.1 + 134166 0.73 0.585933
Target:  5'- uGGCCGUGGCcgcGCGGAUGGCcaccucguaucGGCUGGu- -3'
miRNA:   3'- -CCGGCGUCG---UGUCUAUCG-----------CCGACUuc -5'
10708 5' -55.6 NC_002794.1 + 184059 0.73 0.593011
Target:  5'- gGGCCGCGGCgaaGCGGcacgcgcccacgguGUAGCGGCaGAAc -3'
miRNA:   3'- -CCGGCGUCG---UGUC--------------UAUCGCCGaCUUc -5'
10708 5' -55.6 NC_002794.1 + 30745 0.73 0.606191
Target:  5'- uGGCCGCGGC-----UGGCGcGCUGGAGg -3'
miRNA:   3'- -CCGGCGUCGugucuAUCGC-CGACUUC- -5'
10708 5' -55.6 NC_002794.1 + 66866 0.73 0.606191
Target:  5'- aGGCCGCGGCGu-----GCGGCUGAGc -3'
miRNA:   3'- -CCGGCGUCGUgucuauCGCCGACUUc -5'
10708 5' -55.6 NC_002794.1 + 117375 0.73 0.616352
Target:  5'- gGGCCGCcuGCACGGuc-GCGGC-GAAGc -3'
miRNA:   3'- -CCGGCGu-CGUGUCuauCGCCGaCUUC- -5'
10708 5' -55.6 NC_002794.1 + 143061 0.73 0.626526
Target:  5'- aGGCCGUAGCGCccgcGGCGGCagacguagUGGAGg -3'
miRNA:   3'- -CCGGCGUCGUGucuaUCGCCG--------ACUUC- -5'
10708 5' -55.6 NC_002794.1 + 72419 0.73 0.636703
Target:  5'- cGCCGCGGCGgAGGaggAGCcGGCgGAGGg -3'
miRNA:   3'- cCGGCGUCGUgUCUa--UCG-CCGaCUUC- -5'
10708 5' -55.6 NC_002794.1 + 137987 0.73 0.636703
Target:  5'- cGCCGCAGCGCuGGU-GCaGCUGGGc -3'
miRNA:   3'- cCGGCGUCGUGuCUAuCGcCGACUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.