miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10709 3' -59.3 NC_002794.1 + 86172 0.67 0.745051
Target:  5'- cGACCGGaugcCCcGGGCCGAGC-CGGGa- -3'
miRNA:   3'- -UUGGUUa---GGuCCCGGCUCGcGUCCag -5'
10709 3' -59.3 NC_002794.1 + 86364 0.67 0.745051
Target:  5'- cGACCGGaugcCCcGGGCCGAGC-CGGGa- -3'
miRNA:   3'- -UUGGUUa---GGuCCCGGCUCGcGUCCag -5'
10709 3' -59.3 NC_002794.1 + 86532 0.67 0.745051
Target:  5'- cGACCGGaugcCCcGGGCCGAGC-CGGGa- -3'
miRNA:   3'- -UUGGUUa---GGuCCCGGCUCGcGUCCag -5'
10709 3' -59.3 NC_002794.1 + 86804 0.68 0.655784
Target:  5'- aGACCuaggggaGAUCCAGGGCCGcgaccucgccgGGauCGGGUCg -3'
miRNA:   3'- -UUGG-------UUAGGUCCCGGC-----------UCgcGUCCAG- -5'
10709 3' -59.3 NC_002794.1 + 87030 0.67 0.735509
Target:  5'- cGCagGAUCCGGGGaCCG-GCGCGGcUCg -3'
miRNA:   3'- uUGg-UUAGGUCCC-GGCuCGCGUCcAG- -5'
10709 3' -59.3 NC_002794.1 + 92302 0.7 0.527794
Target:  5'- --aCGAggCGGGGCUGGGCGCGGG-Cg -3'
miRNA:   3'- uugGUUagGUCCCGGCUCGCGUCCaG- -5'
10709 3' -59.3 NC_002794.1 + 101012 0.78 0.186291
Target:  5'- gGGCCu-UCCugucgggggacgcGGGCCGGGCGCGGGUCg -3'
miRNA:   3'- -UUGGuuAGGu------------CCCGGCUCGCGUCCAG- -5'
10709 3' -59.3 NC_002794.1 + 102077 0.66 0.790277
Target:  5'- cGACCug-CCGcGGGCCGAcgaGCcgccgcccacgguGCGGGUCa -3'
miRNA:   3'- -UUGGuuaGGU-CCCGGCU---CG-------------CGUCCAG- -5'
10709 3' -59.3 NC_002794.1 + 104286 0.67 0.735509
Target:  5'- uGCCGAacaggaUCUcGGGCCGGGUGCacuugAGGUUg -3'
miRNA:   3'- uUGGUU------AGGuCCCGGCUCGCG-----UCCAG- -5'
10709 3' -59.3 NC_002794.1 + 105215 0.67 0.735509
Target:  5'- uGAUCAGggucgaCAGGGCCGuGCGCGGcGcCa -3'
miRNA:   3'- -UUGGUUag----GUCCCGGCuCGCGUC-CaG- -5'
10709 3' -59.3 NC_002794.1 + 110280 0.66 0.791169
Target:  5'- cGGCCGccGUCCucGGGCCcgaGAGCcGCGGGg- -3'
miRNA:   3'- -UUGGU--UAGGu-CCCGG---CUCG-CGUCCag -5'
10709 3' -59.3 NC_002794.1 + 111861 0.7 0.576792
Target:  5'- cGCCAccgCCAGGGCCuuguAGCGCGcGGUg -3'
miRNA:   3'- uUGGUua-GGUCCCGGc---UCGCGU-CCAg -5'
10709 3' -59.3 NC_002794.1 + 114138 0.67 0.735509
Target:  5'- cGCCGG-CCAGGGCgCGcaGGCGCcGcGUCa -3'
miRNA:   3'- uUGGUUaGGUCCCG-GC--UCGCGuC-CAG- -5'
10709 3' -59.3 NC_002794.1 + 114358 0.71 0.49914
Target:  5'- cGCCg--CCAGGGCCG-GCuGCAGGg- -3'
miRNA:   3'- uUGGuuaGGUCCCGGCuCG-CGUCCag -5'
10709 3' -59.3 NC_002794.1 + 115876 0.68 0.676743
Target:  5'- -uCCGgggcGUCCGGGGCguccgcgGAGCGCGGGg- -3'
miRNA:   3'- uuGGU----UAGGUCCCGg------CUCGCGUCCag -5'
10709 3' -59.3 NC_002794.1 + 116801 0.79 0.183565
Target:  5'- gAGCCGGcUCGGGcGCCGuAGCGCGGGUCg -3'
miRNA:   3'- -UUGGUUaGGUCC-CGGC-UCGCGUCCAG- -5'
10709 3' -59.3 NC_002794.1 + 117597 0.69 0.636749
Target:  5'- aGGCCuggcacgcGUCCAGGaacucGCCGAGCGaCAGGg- -3'
miRNA:   3'- -UUGGu-------UAGGUCC-----CGGCUCGC-GUCCag -5'
10709 3' -59.3 NC_002794.1 + 118864 0.79 0.183565
Target:  5'- cGCagaAGUCCAGGGCC-AGCuGCAGGUCg -3'
miRNA:   3'- uUGg--UUAGGUCCCGGcUCG-CGUCCAG- -5'
10709 3' -59.3 NC_002794.1 + 119947 0.66 0.773076
Target:  5'- cAGCCGcgCCAGcaGGUCGAGCGUgcucuGGUg -3'
miRNA:   3'- -UUGGUuaGGUC--CCGGCUCGCGu----CCAg -5'
10709 3' -59.3 NC_002794.1 + 120187 0.68 0.646773
Target:  5'- cGCCAagcgGUUCaAGGGCaCGAGCG-GGGUCg -3'
miRNA:   3'- uUGGU----UAGG-UCCCG-GCUCGCgUCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.