miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10709 3' -59.3 NC_002794.1 + 592 0.68 0.696562
Target:  5'- -cUCGGUCCGuucGuGGCCGGGUGC-GGUCa -3'
miRNA:   3'- uuGGUUAGGU---C-CCGGCUCGCGuCCAG- -5'
10709 3' -59.3 NC_002794.1 + 3502 0.66 0.791169
Target:  5'- -cCCGGUcaaagaggaaCCGGuGGCCGAGUGaGGGUCc -3'
miRNA:   3'- uuGGUUA----------GGUC-CCGGCUCGCgUCCAG- -5'
10709 3' -59.3 NC_002794.1 + 5019 0.69 0.596696
Target:  5'- gGACUcgcGUCCGGGGUgGGGgGgGGGUCa -3'
miRNA:   3'- -UUGGu--UAGGUCCCGgCUCgCgUCCAG- -5'
10709 3' -59.3 NC_002794.1 + 7165 0.66 0.791169
Target:  5'- uGACCAucuuuGUCCgguGGGGCUGAGgGgGGGg- -3'
miRNA:   3'- -UUGGU-----UAGG---UCCCGGCUCgCgUCCag -5'
10709 3' -59.3 NC_002794.1 + 23892 0.7 0.537483
Target:  5'- cGCCGAgggcCCGGGaGCCGAGUGCAGc-- -3'
miRNA:   3'- uUGGUUa---GGUCC-CGGCUCGCGUCcag -5'
10709 3' -59.3 NC_002794.1 + 25115 0.66 0.800013
Target:  5'- gGACCGGUCgagaucgagCGGGGCaCGcGCGCAcGGUa -3'
miRNA:   3'- -UUGGUUAG---------GUCCCG-GCuCGCGU-CCAg -5'
10709 3' -59.3 NC_002794.1 + 29828 0.66 0.808712
Target:  5'- gAGCaGGUCCGGGGUCGugcagGGgGCAGGa- -3'
miRNA:   3'- -UUGgUUAGGUCCCGGC-----UCgCGUCCag -5'
10709 3' -59.3 NC_002794.1 + 32594 0.69 0.586728
Target:  5'- gGGCCGGggCCGGGGCCGGG-GCcgGGGaUCg -3'
miRNA:   3'- -UUGGUUa-GGUCCCGGCUCgCG--UCC-AG- -5'
10709 3' -59.3 NC_002794.1 + 37418 0.67 0.729741
Target:  5'- cAGCCGGUCCAGcGCCGucCGCAgcagcagcacgcacuGGUCu -3'
miRNA:   3'- -UUGGUUAGGUCcCGGCucGCGU---------------CCAG- -5'
10709 3' -59.3 NC_002794.1 + 41866 0.68 0.696562
Target:  5'- cGCCGGg-CAGGGCCGGGCGCu---- -3'
miRNA:   3'- uUGGUUagGUCCCGGCUCGCGuccag -5'
10709 3' -59.3 NC_002794.1 + 42480 0.73 0.409317
Target:  5'- cGCgCGcgCCGGGGCCGAGCGgAGaGUg -3'
miRNA:   3'- uUG-GUuaGGUCCCGGCUCGCgUC-CAg -5'
10709 3' -59.3 NC_002794.1 + 47742 0.66 0.783091
Target:  5'- cGCCgGGUCCacguGGcGGCCGuggucgcggcacaacGCGCAGGUCg -3'
miRNA:   3'- uUGG-UUAGG----UC-CCGGCu--------------CGCGUCCAG- -5'
10709 3' -59.3 NC_002794.1 + 53289 0.73 0.392586
Target:  5'- cGACCAcUCCAGGuGCCGAGC---GGUCg -3'
miRNA:   3'- -UUGGUuAGGUCC-CGGCUCGcguCCAG- -5'
10709 3' -59.3 NC_002794.1 + 54227 0.69 0.615699
Target:  5'- cGCC-GUCUcggaugaAGcGGCCGAGCGCGcGGUCc -3'
miRNA:   3'- uUGGuUAGG-------UC-CCGGCUCGCGU-CCAG- -5'
10709 3' -59.3 NC_002794.1 + 56265 0.71 0.518171
Target:  5'- cGGCCA--CC-GGGCCGAGCaGCAGG-Cg -3'
miRNA:   3'- -UUGGUuaGGuCCCGGCUCG-CGUCCaG- -5'
10709 3' -59.3 NC_002794.1 + 57398 0.66 0.808712
Target:  5'- cACCGGcUCCGGcgcccgcguGGCCGGcGUGCuGGUCg -3'
miRNA:   3'- uUGGUU-AGGUC---------CCGGCU-CGCGuCCAG- -5'
10709 3' -59.3 NC_002794.1 + 59123 0.66 0.808712
Target:  5'- cGGCCA--CCGaGGCCGAcuucGCGCAGGg- -3'
miRNA:   3'- -UUGGUuaGGUcCCGGCU----CGCGUCCag -5'
10709 3' -59.3 NC_002794.1 + 59997 0.68 0.666777
Target:  5'- cGCCAGUUCAccGGcGCCGAGCGCAc--- -3'
miRNA:   3'- uUGGUUAGGU--CC-CGGCUCGCGUccag -5'
10709 3' -59.3 NC_002794.1 + 61961 0.72 0.471199
Target:  5'- -cCCGAggCCAGcGGCCGccuGCuGCAGGUCa -3'
miRNA:   3'- uuGGUUa-GGUC-CCGGCu--CG-CGUCCAG- -5'
10709 3' -59.3 NC_002794.1 + 63315 0.79 0.162196
Target:  5'- gAACCGAUCCggcggGGGGcCCGAGCGCGgaccGGUCg -3'
miRNA:   3'- -UUGGUUAGG-----UCCC-GGCUCGCGU----CCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.