miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10709 3' -59.3 NC_002794.1 + 186432 1.06 0.002257
Target:  5'- aAACCAAUCCAGGGCCGAGCGCAGGUCu -3'
miRNA:   3'- -UUGGUUAGGUCCCGGCUCGCGUCCAG- -5'
10709 3' -59.3 NC_002794.1 + 63315 0.79 0.162196
Target:  5'- gAACCGAUCCggcggGGGGcCCGAGCGCGgaccGGUCg -3'
miRNA:   3'- -UUGGUUAGG-----UCCC-GGCUCGCGU----CCAG- -5'
10709 3' -59.3 NC_002794.1 + 118864 0.79 0.183565
Target:  5'- cGCagaAGUCCAGGGCC-AGCuGCAGGUCg -3'
miRNA:   3'- uUGg--UUAGGUCCCGGcUCG-CGUCCAG- -5'
10709 3' -59.3 NC_002794.1 + 116801 0.79 0.183565
Target:  5'- gAGCCGGcUCGGGcGCCGuAGCGCGGGUCg -3'
miRNA:   3'- -UUGGUUaGGUCC-CGGC-UCGCGUCCAG- -5'
10709 3' -59.3 NC_002794.1 + 101012 0.78 0.186291
Target:  5'- gGGCCu-UCCugucgggggacgcGGGCCGGGCGCGGGUCg -3'
miRNA:   3'- -UUGGuuAGGu------------CCCGGCUCGCGUCCAG- -5'
10709 3' -59.3 NC_002794.1 + 137571 0.74 0.337644
Target:  5'- cGCCGucgccgCCGGGGCCgGAGUGCGGGg- -3'
miRNA:   3'- uUGGUua----GGUCCCGG-CUCGCGUCCag -5'
10709 3' -59.3 NC_002794.1 + 140662 0.74 0.368339
Target:  5'- cGCgCAG-CUuuuGGGUCGGGCGCAGGUCg -3'
miRNA:   3'- uUG-GUUaGGu--CCCGGCUCGCGUCCAG- -5'
10709 3' -59.3 NC_002794.1 + 53289 0.73 0.392586
Target:  5'- cGACCAcUCCAGGuGCCGAGC---GGUCg -3'
miRNA:   3'- -UUGGUuAGGUCC-CGGCUCGcguCCAG- -5'
10709 3' -59.3 NC_002794.1 + 42480 0.73 0.409317
Target:  5'- cGCgCGcgCCGGGGCCGAGCGgAGaGUg -3'
miRNA:   3'- uUG-GUuaGGUCCCGGCUCGCgUC-CAg -5'
10709 3' -59.3 NC_002794.1 + 183662 0.73 0.409317
Target:  5'- -uCCGcgCCGGGcCCGAGCGCcgacGGGUCg -3'
miRNA:   3'- uuGGUuaGGUCCcGGCUCGCG----UCCAG- -5'
10709 3' -59.3 NC_002794.1 + 138750 0.72 0.462062
Target:  5'- cGGCCc-UCCgGGGGCCGAGuCGCGgcGGUCg -3'
miRNA:   3'- -UUGGuuAGG-UCCCGGCUC-GCGU--CCAG- -5'
10709 3' -59.3 NC_002794.1 + 61961 0.72 0.471199
Target:  5'- -cCCGAggCCAGcGGCCGccuGCuGCAGGUCa -3'
miRNA:   3'- uuGGUUa-GGUC-CCGGCu--CG-CGUCCAG- -5'
10709 3' -59.3 NC_002794.1 + 114358 0.71 0.49914
Target:  5'- cGCCg--CCAGGGCCG-GCuGCAGGg- -3'
miRNA:   3'- uUGGuuaGGUCCCGGCuCG-CGUCCag -5'
10709 3' -59.3 NC_002794.1 + 56265 0.71 0.518171
Target:  5'- cGGCCA--CC-GGGCCGAGCaGCAGG-Cg -3'
miRNA:   3'- -UUGGUuaGGuCCCGGCUCG-CGUCCaG- -5'
10709 3' -59.3 NC_002794.1 + 92302 0.7 0.527794
Target:  5'- --aCGAggCGGGGCUGGGCGCGGG-Cg -3'
miRNA:   3'- uugGUUagGUCCCGGCUCGCGUCCaG- -5'
10709 3' -59.3 NC_002794.1 + 23892 0.7 0.537483
Target:  5'- cGCCGAgggcCCGGGaGCCGAGUGCAGc-- -3'
miRNA:   3'- uUGGUUa---GGUCC-CGGCUCGCGUCcag -5'
10709 3' -59.3 NC_002794.1 + 181876 0.7 0.537483
Target:  5'- cGCUGccCCGGGGUCGcgaacaggcgacAGCGCGGGUCg -3'
miRNA:   3'- uUGGUuaGGUCCCGGC------------UCGCGUCCAG- -5'
10709 3' -59.3 NC_002794.1 + 179101 0.7 0.565905
Target:  5'- gAACCGuccggucGUCCGcGGuCCGGGCGCGcGGUCg -3'
miRNA:   3'- -UUGGU-------UAGGUcCC-GGCUCGCGU-CCAG- -5'
10709 3' -59.3 NC_002794.1 + 111861 0.7 0.576792
Target:  5'- cGCCAccgCCAGGGCCuuguAGCGCGcGGUg -3'
miRNA:   3'- uUGGUua-GGUCCCGGc---UCGCGU-CCAg -5'
10709 3' -59.3 NC_002794.1 + 32594 0.69 0.586728
Target:  5'- gGGCCGGggCCGGGGCCGGG-GCcgGGGaUCg -3'
miRNA:   3'- -UUGGUUa-GGUCCCGGCUCgCG--UCC-AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.