miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10709 5' -60.8 NC_002794.1 + 186466 1.11 0.001183
Target:  5'- uUCAGCCGACGCCCUCGCUCCUGGAGGg -3'
miRNA:   3'- -AGUCGGCUGCGGGAGCGAGGACCUCC- -5'
10709 5' -60.8 NC_002794.1 + 57111 0.72 0.429105
Target:  5'- aCGGCCGACGCCauggagCGCggCCUGGuGc -3'
miRNA:   3'- aGUCGGCUGCGGga----GCGa-GGACCuCc -5'
10709 5' -60.8 NC_002794.1 + 63170 0.72 0.446147
Target:  5'- aCGGCCGAgGCCgCgaagcggucgCGCUCCUGGGu- -3'
miRNA:   3'- aGUCGGCUgCGG-Ga---------GCGAGGACCUcc -5'
10709 5' -60.8 NC_002794.1 + 137151 0.71 0.472397
Target:  5'- cCGGCCGGcCGCCCUCGgUCCcGGc-- -3'
miRNA:   3'- aGUCGGCU-GCGGGAGCgAGGaCCucc -5'
10709 5' -60.8 NC_002794.1 + 150416 0.71 0.48132
Target:  5'- -aAGCCGugGCCCgcgagGCUggaCCUGGAGu -3'
miRNA:   3'- agUCGGCugCGGGag---CGA---GGACCUCc -5'
10709 5' -60.8 NC_002794.1 + 14533 0.71 0.506724
Target:  5'- cUCGGCCacGGCGCUCUCGCcCCcgucgacgcgcgGGAGGc -3'
miRNA:   3'- -AGUCGG--CUGCGGGAGCGaGGa-----------CCUCC- -5'
10709 5' -60.8 NC_002794.1 + 131285 0.7 0.536431
Target:  5'- --cGCCGGCGCCgUCGCUCCgccgcccgUGGucGu -3'
miRNA:   3'- aguCGGCUGCGGgAGCGAGG--------ACCucC- -5'
10709 5' -60.8 NC_002794.1 + 68315 0.7 0.555303
Target:  5'- gCGGCCGACGCgUUcCGCggCCUGGuGa -3'
miRNA:   3'- aGUCGGCUGCGgGA-GCGa-GGACCuCc -5'
10709 5' -60.8 NC_002794.1 + 23981 0.7 0.555303
Target:  5'- -aGGCCGGCGCCaccgUCGCUCCguccGAcGGg -3'
miRNA:   3'- agUCGGCUGCGGg---AGCGAGGac--CU-CC- -5'
10709 5' -60.8 NC_002794.1 + 78080 0.7 0.572451
Target:  5'- cCGGCCGcCGCCCUCGcCUCCgucgcgaaacgcGGcGGc -3'
miRNA:   3'- aGUCGGCuGCGGGAGC-GAGGa-----------CCuCC- -5'
10709 5' -60.8 NC_002794.1 + 37249 0.69 0.593574
Target:  5'- --cGUCGACGCUCUCGCUCUccgucGGcGGg -3'
miRNA:   3'- aguCGGCUGCGGGAGCGAGGa----CCuCC- -5'
10709 5' -60.8 NC_002794.1 + 84620 0.69 0.632244
Target:  5'- cCAGCCGGCGUCa--GaCUCCUcGGAGa -3'
miRNA:   3'- aGUCGGCUGCGGgagC-GAGGA-CCUCc -5'
10709 5' -60.8 NC_002794.1 + 102888 0.68 0.641927
Target:  5'- -uGGCCGACcugguGCCCaaGCgggucuaCCUGGGGGa -3'
miRNA:   3'- agUCGGCUG-----CGGGagCGa------GGACCUCC- -5'
10709 5' -60.8 NC_002794.1 + 61834 0.68 0.651604
Target:  5'- gCGGCCGGCGUCaCUCcGCUCCgcgccccaUGGAc- -3'
miRNA:   3'- aGUCGGCUGCGG-GAG-CGAGG--------ACCUcc -5'
10709 5' -60.8 NC_002794.1 + 121939 0.68 0.651604
Target:  5'- -aGGCCGACGCgCUgaucgaGCgCCUGGAGc -3'
miRNA:   3'- agUCGGCUGCGgGAg-----CGaGGACCUCc -5'
10709 5' -60.8 NC_002794.1 + 16036 0.68 0.661267
Target:  5'- cCAGCCGACccgGCCuCUgGaUCCUcGGGGGa -3'
miRNA:   3'- aGUCGGCUG---CGG-GAgCgAGGA-CCUCC- -5'
10709 5' -60.8 NC_002794.1 + 99546 0.68 0.661267
Target:  5'- -gGGCCGcggaaaccgcgcGCGCCCUcCGCgggCgaGGGGGg -3'
miRNA:   3'- agUCGGC------------UGCGGGA-GCGa--GgaCCUCC- -5'
10709 5' -60.8 NC_002794.1 + 121807 0.68 0.661267
Target:  5'- cCGGCCGGCGCCUgcCGCUgCaGGAu- -3'
miRNA:   3'- aGUCGGCUGCGGGa-GCGAgGaCCUcc -5'
10709 5' -60.8 NC_002794.1 + 49756 0.68 0.661267
Target:  5'- -aGGCCGcucgcACGCgCUCGuCUCCccGGAGGc -3'
miRNA:   3'- agUCGGC-----UGCGgGAGC-GAGGa-CCUCC- -5'
10709 5' -60.8 NC_002794.1 + 180909 0.68 0.670909
Target:  5'- cUCGGCCG-CGgUCUCGCcggcgCCgucGGAGGu -3'
miRNA:   3'- -AGUCGGCuGCgGGAGCGa----GGa--CCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.