miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10709 5' -60.8 NC_002794.1 + 12706 0.66 0.799458
Target:  5'- gUCGGCCGugGgCUgcgCGUUCCgcggcgacGAGGg -3'
miRNA:   3'- -AGUCGGCugCgGGa--GCGAGGac------CUCC- -5'
10709 5' -60.8 NC_002794.1 + 14533 0.71 0.506724
Target:  5'- cUCGGCCacGGCGCUCUCGCcCCcgucgacgcgcgGGAGGc -3'
miRNA:   3'- -AGUCGG--CUGCGGGAGCGaGGa-----------CCUCC- -5'
10709 5' -60.8 NC_002794.1 + 16036 0.68 0.661267
Target:  5'- cCAGCCGACccgGCCuCUgGaUCCUcGGGGGa -3'
miRNA:   3'- aGUCGGCUG---CGG-GAgCgAGGA-CCUCC- -5'
10709 5' -60.8 NC_002794.1 + 23981 0.7 0.555303
Target:  5'- -aGGCCGGCGCCaccgUCGCUCCguccGAcGGg -3'
miRNA:   3'- agUCGGCUGCGGg---AGCGAGGac--CU-CC- -5'
10709 5' -60.8 NC_002794.1 + 37249 0.69 0.593574
Target:  5'- --cGUCGACGCUCUCGCUCUccgucGGcGGg -3'
miRNA:   3'- aguCGGCUGCGGGAGCGAGGa----CCuCC- -5'
10709 5' -60.8 NC_002794.1 + 41934 0.67 0.699635
Target:  5'- cCAGCCcgaagugcACGCCCUCGgCgugcgcggCCUGGaAGGu -3'
miRNA:   3'- aGUCGGc-------UGCGGGAGC-Ga-------GGACC-UCC- -5'
10709 5' -60.8 NC_002794.1 + 44015 0.66 0.790908
Target:  5'- gCGGCCGGCGUCCgcagaccgUCGCUCUccgcccccGGGGu -3'
miRNA:   3'- aGUCGGCUGCGGG--------AGCGAGGa-------CCUCc -5'
10709 5' -60.8 NC_002794.1 + 49756 0.68 0.661267
Target:  5'- -aGGCCGcucgcACGCgCUCGuCUCCccGGAGGc -3'
miRNA:   3'- agUCGGC-----UGCGgGAGC-GAGGa-CCUCC- -5'
10709 5' -60.8 NC_002794.1 + 57111 0.72 0.429105
Target:  5'- aCGGCCGACGCCauggagCGCggCCUGGuGc -3'
miRNA:   3'- aGUCGGCUGCGGga----GCGa-GGACCuCc -5'
10709 5' -60.8 NC_002794.1 + 57621 0.66 0.755506
Target:  5'- gCGGCCGACGaCCUgGCcgacccgcaguUCCUgcgcccGGAGGc -3'
miRNA:   3'- aGUCGGCUGCgGGAgCG-----------AGGA------CCUCC- -5'
10709 5' -60.8 NC_002794.1 + 58358 0.67 0.746392
Target:  5'- cUCGGCCuGGCGCCgCcCGacuUCCaGGAGGc -3'
miRNA:   3'- -AGUCGG-CUGCGG-GaGCg--AGGaCCUCC- -5'
10709 5' -60.8 NC_002794.1 + 61834 0.68 0.651604
Target:  5'- gCGGCCGGCGUCaCUCcGCUCCgcgccccaUGGAc- -3'
miRNA:   3'- aGUCGGCUGCGG-GAG-CGAGG--------ACCUcc -5'
10709 5' -60.8 NC_002794.1 + 63170 0.72 0.446147
Target:  5'- aCGGCCGAgGCCgCgaagcggucgCGCUCCUGGGu- -3'
miRNA:   3'- aGUCGGCUgCGG-Ga---------GCGAGGACCUcc -5'
10709 5' -60.8 NC_002794.1 + 68315 0.7 0.555303
Target:  5'- gCGGCCGACGCgUUcCGCggCCUGGuGa -3'
miRNA:   3'- aGUCGGCUGCGgGA-GCGa-GGACCuCc -5'
10709 5' -60.8 NC_002794.1 + 69028 0.68 0.680522
Target:  5'- --cGCCGGCGCCCUCGCcggcuUCCUc---- -3'
miRNA:   3'- aguCGGCUGCGGGAGCG-----AGGAccucc -5'
10709 5' -60.8 NC_002794.1 + 70681 0.66 0.773433
Target:  5'- gCGGCggUGACGUCCugUCGC-CgCUGGGGGu -3'
miRNA:   3'- aGUCG--GCUGCGGG--AGCGaG-GACCUCC- -5'
10709 5' -60.8 NC_002794.1 + 78080 0.7 0.572451
Target:  5'- cCGGCCGcCGCCCUCGcCUCCgucgcgaaacgcGGcGGc -3'
miRNA:   3'- aGUCGGCuGCGGGAGC-GAGGa-----------CCuCC- -5'
10709 5' -60.8 NC_002794.1 + 84620 0.69 0.632244
Target:  5'- cCAGCCGGCGUCa--GaCUCCUcGGAGa -3'
miRNA:   3'- aGUCGGCUGCGGgagC-GAGGA-CCUCc -5'
10709 5' -60.8 NC_002794.1 + 98356 0.66 0.764522
Target:  5'- cCGGCCGAuCGCCg-CGCggCUGGcGGGa -3'
miRNA:   3'- aGUCGGCU-GCGGgaGCGagGACC-UCC- -5'
10709 5' -60.8 NC_002794.1 + 99546 0.68 0.661267
Target:  5'- -gGGCCGcggaaaccgcgcGCGCCCUcCGCgggCgaGGGGGg -3'
miRNA:   3'- agUCGGC------------UGCGGGA-GCGa--GgaCCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.