miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10710 3' -47.6 NC_002794.1 + 185719 1.12 0.014915
Target:  5'- gCGAAAGAGAGCGCUACACAAACAGACa -3'
miRNA:   3'- -GCUUUCUCUCGCGAUGUGUUUGUCUG- -5'
10710 3' -47.6 NC_002794.1 + 42589 0.8 0.741196
Target:  5'- aCGGAGGAGGGCGCggcggcCGgGAGCGGGCu -3'
miRNA:   3'- -GCUUUCUCUCGCGau----GUgUUUGUCUG- -5'
10710 3' -47.6 NC_002794.1 + 157738 0.75 0.923502
Target:  5'- gCGGAGGAGAGCGUUcGCGCucaguuCGGGCc -3'
miRNA:   3'- -GCUUUCUCUCGCGA-UGUGuuu---GUCUG- -5'
10710 3' -47.6 NC_002794.1 + 82829 0.73 0.961121
Target:  5'- uCGAGAGAcgcacggcGAGCGCgaGCGCGAGCGcGACc -3'
miRNA:   3'- -GCUUUCU--------CUCGCGa-UGUGUUUGU-CUG- -5'
10710 3' -47.6 NC_002794.1 + 36935 0.73 0.964689
Target:  5'- gCGGAGGAGAaaguccGCGUcGCGCGgcGGCAGGCa -3'
miRNA:   3'- -GCUUUCUCU------CGCGaUGUGU--UUGUCUG- -5'
10710 3' -47.6 NC_002794.1 + 192931 0.72 0.979131
Target:  5'- uCGAGAuGAacggccAGCaGCUGCGCAGACAGGCc -3'
miRNA:   3'- -GCUUU-CUc-----UCG-CGAUGUGUUUGUCUG- -5'
10710 3' -47.6 NC_002794.1 + 34737 0.72 0.981393
Target:  5'- gCGGccGcAGAGCGCgcgacgGCGCGGugGGACg -3'
miRNA:   3'- -GCUuuC-UCUCGCGa-----UGUGUUugUCUG- -5'
10710 3' -47.6 NC_002794.1 + 83053 0.71 0.987082
Target:  5'- gCGGAGGAcGAGCGCc-CACccACGGGCg -3'
miRNA:   3'- -GCUUUCU-CUCGCGauGUGuuUGUCUG- -5'
10710 3' -47.6 NC_002794.1 + 110063 0.71 0.990057
Target:  5'- cCGucGGAGAGCGCggauCGCGgucGugAGACg -3'
miRNA:   3'- -GCuuUCUCUCGCGau--GUGU---UugUCUG- -5'
10710 3' -47.6 NC_002794.1 + 98277 0.71 0.992466
Target:  5'- uCGAAcaacggcgcaccGGGGAGaUGCUGCACGAGCuGAg -3'
miRNA:   3'- -GCUU------------UCUCUC-GCGAUGUGUUUGuCUg -5'
10710 3' -47.6 NC_002794.1 + 44355 0.71 0.992466
Target:  5'- gCGAGAccGAGAGCGCg--GCGGGCGcGACg -3'
miRNA:   3'- -GCUUU--CUCUCGCGaugUGUUUGU-CUG- -5'
10710 3' -47.6 NC_002794.1 + 182449 0.7 0.995185
Target:  5'- uCGGucucGGAGAGCGCggcggUGCGCGgcgucAGCAGAUa -3'
miRNA:   3'- -GCUu---UCUCUCGCG-----AUGUGU-----UUGUCUG- -5'
10710 3' -47.6 NC_002794.1 + 139195 0.7 0.995478
Target:  5'- uCGAAGGccaugacggcgacgaAGGGCGuCUGCAgGAGCAGGa -3'
miRNA:   3'- -GCUUUC---------------UCUCGC-GAUGUgUUUGUCUg -5'
10710 3' -47.6 NC_002794.1 + 155531 0.7 0.99589
Target:  5'- uCGGGuuuGGAGCuGUUGCACcGACGGACg -3'
miRNA:   3'- -GCUUuc-UCUCG-CGAUGUGuUUGUCUG- -5'
10710 3' -47.6 NC_002794.1 + 134008 0.7 0.99589
Target:  5'- cCGGGuGcGAGCGCUGCACGGuCGGGu -3'
miRNA:   3'- -GCUUuCuCUCGCGAUGUGUUuGUCUg -5'
10710 3' -47.6 NC_002794.1 + 30763 0.69 0.996449
Target:  5'- uGGAGGAucugGaAGCGCUGCACGAagaugucGCGGAa -3'
miRNA:   3'- gCUUUCU----C-UCGCGAUGUGUU-------UGUCUg -5'
10710 3' -47.6 NC_002794.1 + 145234 0.69 0.996508
Target:  5'- uCGGAGGcgcGcGCGCUGCGgAAGCGGAUc -3'
miRNA:   3'- -GCUUUCu--CuCGCGAUGUgUUUGUCUG- -5'
10710 3' -47.6 NC_002794.1 + 111195 0.69 0.996508
Target:  5'- -cGAAGAGguugccguAGCGCUGCGCGuAGCGGGg -3'
miRNA:   3'- gcUUUCUC--------UCGCGAUGUGU-UUGUCUg -5'
10710 3' -47.6 NC_002794.1 + 10866 0.69 0.996508
Target:  5'- uCGGAAGccGAGCGUgaccgACgACGGGCGGGCg -3'
miRNA:   3'- -GCUUUCu-CUCGCGa----UG-UGUUUGUCUG- -5'
10710 3' -47.6 NC_002794.1 + 131712 0.69 0.997047
Target:  5'- cCGGAccccGAGAGCGa---GCGAGCGGGCg -3'
miRNA:   3'- -GCUUu---CUCUCGCgaugUGUUUGUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.