miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10710 3' -47.6 NC_002794.1 + 9897 0.67 0.9998
Target:  5'- cCGAuAGAGAGCcacGCUAUcgaGCAcAgGGACg -3'
miRNA:   3'- -GCUuUCUCUCG---CGAUG---UGUuUgUCUG- -5'
10710 3' -47.6 NC_002794.1 + 10866 0.69 0.996508
Target:  5'- uCGGAAGccGAGCGUgaccgACgACGGGCGGGCg -3'
miRNA:   3'- -GCUUUCu-CUCGCGa----UG-UGUUUGUCUG- -5'
10710 3' -47.6 NC_002794.1 + 22162 0.68 0.999213
Target:  5'- uCGAGuGAGcaccGGCGCUcCACGGACGGcCg -3'
miRNA:   3'- -GCUUuCUC----UCGCGAuGUGUUUGUCuG- -5'
10710 3' -47.6 NC_002794.1 + 22217 0.67 0.999652
Target:  5'- aCGAAcGAGGGacacacacaCGCUcgacacacggaggcACGCGAACGGGCg -3'
miRNA:   3'- -GCUUuCUCUC---------GCGA--------------UGUGUUUGUCUG- -5'
10710 3' -47.6 NC_002794.1 + 30763 0.69 0.996449
Target:  5'- uGGAGGAucugGaAGCGCUGCACGAagaugucGCGGAa -3'
miRNA:   3'- gCUUUCU----C-UCGCGAUGUGUU-------UGUCUg -5'
10710 3' -47.6 NC_002794.1 + 33110 0.67 0.999675
Target:  5'- uGAAcGuGAGCGgc-CGCGGGCAGACg -3'
miRNA:   3'- gCUUuCuCUCGCgauGUGUUUGUCUG- -5'
10710 3' -47.6 NC_002794.1 + 34737 0.72 0.981393
Target:  5'- gCGGccGcAGAGCGCgcgacgGCGCGGugGGACg -3'
miRNA:   3'- -GCUuuC-UCUCGCGa-----UGUGUUugUCUG- -5'
10710 3' -47.6 NC_002794.1 + 36935 0.73 0.964689
Target:  5'- gCGGAGGAGAaaguccGCGUcGCGCGgcGGCAGGCa -3'
miRNA:   3'- -GCUUUCUCU------CGCGaUGUGU--UUGUCUG- -5'
10710 3' -47.6 NC_002794.1 + 42589 0.8 0.741196
Target:  5'- aCGGAGGAGGGCGCggcggcCGgGAGCGGGCu -3'
miRNA:   3'- -GCUUUCUCUCGCGau----GUgUUUGUCUG- -5'
10710 3' -47.6 NC_002794.1 + 43067 0.67 0.999591
Target:  5'- cCGAAAcAGGGCGUUcuCGCAgcuguAGCGGACg -3'
miRNA:   3'- -GCUUUcUCUCGCGAu-GUGU-----UUGUCUG- -5'
10710 3' -47.6 NC_002794.1 + 44307 0.69 0.998268
Target:  5'- gCGAGgcGGGGAGCGac-CGCGAGCGcGGCg -3'
miRNA:   3'- -GCUU--UCUCUCGCgauGUGUUUGU-CUG- -5'
10710 3' -47.6 NC_002794.1 + 44355 0.71 0.992466
Target:  5'- gCGAGAccGAGAGCGCg--GCGGGCGcGACg -3'
miRNA:   3'- -GCUUU--CUCUCGCGaugUGUUUGU-CUG- -5'
10710 3' -47.6 NC_002794.1 + 51272 0.66 0.99993
Target:  5'- cCGGGAGGcaGGCGCggcccGCcCGAACGGGCa -3'
miRNA:   3'- -GCUUUCUc-UCGCGa----UGuGUUUGUCUG- -5'
10710 3' -47.6 NC_002794.1 + 69368 0.67 0.999675
Target:  5'- gGAGAucGGGCGCgacgaaGCGAACAGAa -3'
miRNA:   3'- gCUUUcuCUCGCGaug---UGUUUGUCUg -5'
10710 3' -47.6 NC_002794.1 + 82829 0.73 0.961121
Target:  5'- uCGAGAGAcgcacggcGAGCGCgaGCGCGAGCGcGACc -3'
miRNA:   3'- -GCUUUCU--------CUCGCGa-UGUGUUUGU-CUG- -5'
10710 3' -47.6 NC_002794.1 + 83053 0.71 0.987082
Target:  5'- gCGGAGGAcGAGCGCc-CACccACGGGCg -3'
miRNA:   3'- -GCUUUCU-CUCGCGauGUGuuUGUCUG- -5'
10710 3' -47.6 NC_002794.1 + 96879 0.68 0.998566
Target:  5'- aCGGAcGGuGGCGCUACG-GGGCAGGCg -3'
miRNA:   3'- -GCUUuCUcUCGCGAUGUgUUUGUCUG- -5'
10710 3' -47.6 NC_002794.1 + 98277 0.71 0.992466
Target:  5'- uCGAAcaacggcgcaccGGGGAGaUGCUGCACGAGCuGAg -3'
miRNA:   3'- -GCUU------------UCUCUC-GCGAUGUGUUUGuCUg -5'
10710 3' -47.6 NC_002794.1 + 104901 0.67 0.999675
Target:  5'- ----cGAGGcgccGUGCUGCuCGAGCAGGCg -3'
miRNA:   3'- gcuuuCUCU----CGCGAUGuGUUUGUCUG- -5'
10710 3' -47.6 NC_002794.1 + 106296 0.68 0.999349
Target:  5'- gCGAGAGAcgacgacgacgacGAGCGCgACGCGcgcGACGGGu -3'
miRNA:   3'- -GCUUUCU-------------CUCGCGaUGUGU---UUGUCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.