miRNA display CGI


Results 1 - 20 of 539 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10710 5' -66.9 NC_002794.1 + 185753 1.12 0.000293
Target:  5'- cGCGUCCAGCCGCCGGCGCGGCCGCCCg -3'
miRNA:   3'- -CGCAGGUCGGCGGCCGCGCCGGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 187573 0.86 0.024025
Target:  5'- cCGUaCCcGCCGUCGGCGCGGCCGCCg -3'
miRNA:   3'- cGCA-GGuCGGCGGCCGCGCCGGCGGg -5'
10710 5' -66.9 NC_002794.1 + 50722 0.84 0.033207
Target:  5'- cGCGUUC-GCCGcCCGGgGCGGCCGCCUc -3'
miRNA:   3'- -CGCAGGuCGGC-GGCCgCGCCGGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 181426 0.83 0.037592
Target:  5'- aUGUCCgcgaAGCCGUCGGCGaggGGCCGCCCg -3'
miRNA:   3'- cGCAGG----UCGGCGGCCGCg--CCGGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 193432 0.82 0.048129
Target:  5'- uCGUCCAGCCGuCCGGCaC-GCCGCCCa -3'
miRNA:   3'- cGCAGGUCGGC-GGCCGcGcCGGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 185163 0.81 0.051818
Target:  5'- cGCGUCCu-CCGCCGGCGCGGCgCGgUCg -3'
miRNA:   3'- -CGCAGGucGGCGGCCGCGCCG-GCgGG- -5'
10710 5' -66.9 NC_002794.1 + 60648 0.81 0.054429
Target:  5'- gGCGgcgCCGGCCacCCGGCGCGcGCCGCCg -3'
miRNA:   3'- -CGCa--GGUCGGc-GGCCGCGC-CGGCGGg -5'
10710 5' -66.9 NC_002794.1 + 137139 0.81 0.055781
Target:  5'- cCGUCCGcCCGcCCGGC-CGGCCGCCCu -3'
miRNA:   3'- cGCAGGUcGGC-GGCCGcGCCGGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 29207 0.81 0.058585
Target:  5'- cCGUCCGGCgGUCGGCGgccguCGGCCGCCg -3'
miRNA:   3'- cGCAGGUCGgCGGCCGC-----GCCGGCGGg -5'
10710 5' -66.9 NC_002794.1 + 58391 0.81 0.060038
Target:  5'- cGCGggcgCCAGCUGCUggagcacgccaaGGUGCGGCCGCCg -3'
miRNA:   3'- -CGCa---GGUCGGCGG------------CCGCGCCGGCGGg -5'
10710 5' -66.9 NC_002794.1 + 36020 0.8 0.061525
Target:  5'- gGCGgaaUCC-GCCGuCCGGCcCGGCCGCCCg -3'
miRNA:   3'- -CGC---AGGuCGGC-GGCCGcGCCGGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 149271 0.8 0.066205
Target:  5'- uCGUCCccGCCGgCGGCGCGGCgGCUCg -3'
miRNA:   3'- cGCAGGu-CGGCgGCCGCGCCGgCGGG- -5'
10710 5' -66.9 NC_002794.1 + 101434 0.8 0.066205
Target:  5'- cGCGacgaUCCGGggaCGCCGGCGCGcCCGCCCg -3'
miRNA:   3'- -CGC----AGGUCg--GCGGCCGCGCcGGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 115070 0.8 0.069513
Target:  5'- cCGUCCAGUC-CaCGGCcucgGCGGCCGCCCg -3'
miRNA:   3'- cGCAGGUCGGcG-GCCG----CGCCGGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 121371 0.79 0.07298
Target:  5'- gGCGUCCGagccggccGCCGCCGGgacCGCGGCCgGCgCCg -3'
miRNA:   3'- -CGCAGGU--------CGGCGGCC---GCGCCGG-CG-GG- -5'
10710 5' -66.9 NC_002794.1 + 2618 0.78 0.088578
Target:  5'- ---cCCGGCCGCCGGCGCGcGUC-CCCa -3'
miRNA:   3'- cgcaGGUCGGCGGCCGCGC-CGGcGGG- -5'
10710 5' -66.9 NC_002794.1 + 187756 0.78 0.092947
Target:  5'- --cUCCGaacGCCGCCGGCGcCGGUCGCCUc -3'
miRNA:   3'- cgcAGGU---CGGCGGCCGC-GCCGGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 53907 0.78 0.095208
Target:  5'- gGCGUCCucgucGCCGUCGGCG-GcGCCGCCg -3'
miRNA:   3'- -CGCAGGu----CGGCGGCCGCgC-CGGCGGg -5'
10710 5' -66.9 NC_002794.1 + 80429 0.78 0.097287
Target:  5'- gGCGgggCC-GCCGCCGGCGgccgccggcccguCGGCgGCCCg -3'
miRNA:   3'- -CGCa--GGuCGGCGGCCGC-------------GCCGgCGGG- -5'
10710 5' -66.9 NC_002794.1 + 59215 0.78 0.09846
Target:  5'- gGCGUCuCGGCCG-CGGCGCGcgagcucuucgcgcuGCUGCCCu -3'
miRNA:   3'- -CGCAG-GUCGGCgGCCGCGC---------------CGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.