miRNA display CGI


Results 1 - 20 of 539 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10710 5' -66.9 NC_002794.1 + 552 0.67 0.460224
Target:  5'- uUGcCCGGCC-UCGGCGCGGCgGUg- -3'
miRNA:   3'- cGCaGGUCGGcGGCCGCGCCGgCGgg -5'
10710 5' -66.9 NC_002794.1 + 595 0.66 0.503217
Target:  5'- -gGUCCGuucGUgGCCgGGUGCGGUCaggcgGCCCg -3'
miRNA:   3'- cgCAGGU---CGgCGG-CCGCGCCGG-----CGGG- -5'
10710 5' -66.9 NC_002794.1 + 834 0.68 0.414492
Target:  5'- --cUCCGGUCcCCGGCGCGuGCguucggcccagcgcgCGCCCg -3'
miRNA:   3'- cgcAGGUCGGcGGCCGCGC-CG---------------GCGGG- -5'
10710 5' -66.9 NC_002794.1 + 1271 0.7 0.297941
Target:  5'- uGCG-CCAGCCaCCGGCcuucuaaggacCGGCCGCUg -3'
miRNA:   3'- -CGCaGGUCGGcGGCCGc----------GCCGGCGGg -5'
10710 5' -66.9 NC_002794.1 + 2618 0.78 0.088578
Target:  5'- ---cCCGGCCGCCGGCGCGcGUC-CCCa -3'
miRNA:   3'- cgcaGGUCGGCGGCCGCGC-CGGcGGG- -5'
10710 5' -66.9 NC_002794.1 + 4233 0.71 0.273666
Target:  5'- cGUGUCUAGaCGUCGGUGCGGCU-CUCg -3'
miRNA:   3'- -CGCAGGUCgGCGGCCGCGCCGGcGGG- -5'
10710 5' -66.9 NC_002794.1 + 4820 0.69 0.328556
Target:  5'- cGCGUUCgucgaacgguuguuGGCCaCCuGCGCGGCCcacguGCCCg -3'
miRNA:   3'- -CGCAGG--------------UCGGcGGcCGCGCCGG-----CGGG- -5'
10710 5' -66.9 NC_002794.1 + 6930 0.68 0.395764
Target:  5'- -aGcCgCAGCCGCC-GCGCGGCa-CCCu -3'
miRNA:   3'- cgCaG-GUCGGCGGcCGCGCCGgcGGG- -5'
10710 5' -66.9 NC_002794.1 + 11644 0.67 0.435382
Target:  5'- aGCGaCgGGCgGCCGacgaCGCGGCcCGCCg -3'
miRNA:   3'- -CGCaGgUCGgCGGCc---GCGCCG-GCGGg -5'
10710 5' -66.9 NC_002794.1 + 11796 0.72 0.235037
Target:  5'- gGUGUCCGuggcGCCGCCGcCGCcgucGCCGCCUu -3'
miRNA:   3'- -CGCAGGU----CGGCGGCcGCGc---CGGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 11846 0.77 0.104781
Target:  5'- cGCGaccUCCGaCCGCCGGCGaCGaCCGCCCg -3'
miRNA:   3'- -CGC---AGGUcGGCGGCCGC-GCcGGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 11983 0.69 0.351405
Target:  5'- gGCGUCCGGCgGCUGGuUGCuGCUGUg- -3'
miRNA:   3'- -CGCAGGUCGgCGGCC-GCGcCGGCGgg -5'
10710 5' -66.9 NC_002794.1 + 12017 0.7 0.297941
Target:  5'- aUGUgC-GCCGCCGGCcCGGgCGUCCg -3'
miRNA:   3'- cGCAgGuCGGCGGCCGcGCCgGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 12223 0.73 0.201092
Target:  5'- gGCGUCgGcGgCGCCGGCG-GcGCCGUCCg -3'
miRNA:   3'- -CGCAGgU-CgGCGGCCGCgC-CGGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 13111 0.75 0.15279
Target:  5'- uGCGUUCGGCgggguCGCC-GCGCGGCuCGCUCg -3'
miRNA:   3'- -CGCAGGUCG-----GCGGcCGCGCCG-GCGGG- -5'
10710 5' -66.9 NC_002794.1 + 13811 0.73 0.205667
Target:  5'- cGgGcCCGGCCGgCGGCGaCGGCCuCCUc -3'
miRNA:   3'- -CgCaGGUCGGCgGCCGC-GCCGGcGGG- -5'
10710 5' -66.9 NC_002794.1 + 13959 0.76 0.132805
Target:  5'- cGUGUCgAGCCGCuCGGagacguucgcUGCGGCCGCUa -3'
miRNA:   3'- -CGCAGgUCGGCG-GCC----------GCGCCGGCGGg -5'
10710 5' -66.9 NC_002794.1 + 14144 0.66 0.520902
Target:  5'- cCGUCCGGuCCGUCGucgaGCcccGCCGCCUg -3'
miRNA:   3'- cGCAGGUC-GGCGGCcg--CGc--CGGCGGG- -5'
10710 5' -66.9 NC_002794.1 + 14197 0.67 0.435382
Target:  5'- aGCGUcCCGGcCCGCUGGcCGCcccaacGCCaCCCg -3'
miRNA:   3'- -CGCA-GGUC-GGCGGCC-GCGc-----CGGcGGG- -5'
10710 5' -66.9 NC_002794.1 + 14465 0.7 0.304264
Target:  5'- cGUGUCgagCGGCgCGCCGcGCucgcuguucgcgGCGGCgGCCCg -3'
miRNA:   3'- -CGCAG---GUCG-GCGGC-CG------------CGCCGgCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.