miRNA display CGI


Results 21 - 40 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10711 3' -52.8 NC_002794.1 + 119434 0.78 0.508667
Target:  5'- gCAGgUCCGAcGgcgGCGGCGGUGGCGGCg -3'
miRNA:   3'- gGUCgAGGUU-Ca--UGCCGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 180749 0.78 0.528406
Target:  5'- uCCGGCUCCu----CGGCGGCuuCGGCg -3'
miRNA:   3'- -GGUCGAGGuucauGCCGUCGuuGUCG- -5'
10711 3' -52.8 NC_002794.1 + 194768 0.78 0.528406
Target:  5'- aCuGCUCCGAGaACGGcCGGCAcgcgcGCAGCg -3'
miRNA:   3'- gGuCGAGGUUCaUGCC-GUCGU-----UGUCG- -5'
10711 3' -52.8 NC_002794.1 + 114696 0.78 0.538382
Target:  5'- cCCGGacCUCCugcGAGacggACGGCGGCGGCGGCg -3'
miRNA:   3'- -GGUC--GAGG---UUCa---UGCCGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 19441 0.78 0.538382
Target:  5'- aCCAgGCcCCGAGcgggcacgaGCGGCGGCGGCGGCg -3'
miRNA:   3'- -GGU-CGaGGUUCa--------UGCCGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 41277 0.77 0.548421
Target:  5'- --cGCUCCGAGaACGGCGGCGGCuccgacGCg -3'
miRNA:   3'- gguCGAGGUUCaUGCCGUCGUUGu-----CG- -5'
10711 3' -52.8 NC_002794.1 + 116924 0.77 0.565618
Target:  5'- gUCGGCUCCGGcGUcgucggcguccccgGCGGCGGCGuCGGCg -3'
miRNA:   3'- -GGUCGAGGUU-CA--------------UGCCGUCGUuGUCG- -5'
10711 3' -52.8 NC_002794.1 + 129928 0.77 0.568668
Target:  5'- gCCAGg-CCGuGgcgACGGCGGCGGCGGCg -3'
miRNA:   3'- -GGUCgaGGUuCa--UGCCGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 107862 0.77 0.57274
Target:  5'- aCCuGCUCCAcugcaucgcggaggcGGcGCGGCGGguGCGGCu -3'
miRNA:   3'- -GGuCGAGGU---------------UCaUGCCGUCguUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 191984 0.77 0.578862
Target:  5'- aCGGCUCCuccgacggccGGG-ACGGUAGCGGCGGUg -3'
miRNA:   3'- gGUCGAGG----------UUCaUGCCGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 147960 0.77 0.589095
Target:  5'- cCgGGCUCCGAGcGCGuGCAGCGugugGCGGUg -3'
miRNA:   3'- -GgUCGAGGUUCaUGC-CGUCGU----UGUCG- -5'
10711 3' -52.8 NC_002794.1 + 92232 0.76 0.59936
Target:  5'- gCCGGCgacgCCAAGgagcccucgGCGGCgucgcuGGCGGCGGCg -3'
miRNA:   3'- -GGUCGa---GGUUCa--------UGCCG------UCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 53052 0.76 0.613771
Target:  5'- gCGGCUCCAGcGUA-GGCAGCGccgcgccgccagcucGCGGCa -3'
miRNA:   3'- gGUCGAGGUU-CAUgCCGUCGU---------------UGUCG- -5'
10711 3' -52.8 NC_002794.1 + 142128 0.75 0.6509
Target:  5'- cCCGGCggccgaccgCCGGGUcACGGCGGaGGCGGCg -3'
miRNA:   3'- -GGUCGa--------GGUUCA-UGCCGUCgUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 142195 0.75 0.6509
Target:  5'- gCGGCagUgCGGGaagcgGCGGCGGCAGCGGCg -3'
miRNA:   3'- gGUCG--AgGUUCa----UGCCGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 117778 0.75 0.660167
Target:  5'- uCCAGCaCCGGGUucAUGGUccgccgcacguucAGCAGCAGCg -3'
miRNA:   3'- -GGUCGaGGUUCA--UGCCG-------------UCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 79411 0.75 0.661196
Target:  5'- cCCuGUUcgacaagaCCAAGggcccgGCGGCGGCGGCGGCg -3'
miRNA:   3'- -GGuCGA--------GGUUCa-----UGCCGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 115168 0.75 0.671468
Target:  5'- aCCAGCUCCuGGUagACGGCccGGUGcCGGCg -3'
miRNA:   3'- -GGUCGAGGuUCA--UGCCG--UCGUuGUCG- -5'
10711 3' -52.8 NC_002794.1 + 67008 0.75 0.671468
Target:  5'- aCAGa--CGAGUcCGGCGGCGGCGGCc -3'
miRNA:   3'- gGUCgagGUUCAuGCCGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 154361 0.75 0.681707
Target:  5'- cCCGcGCggUCCAGGccGCGGCGGCGGCGGg -3'
miRNA:   3'- -GGU-CG--AGGUUCa-UGCCGUCGUUGUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.