miRNA display CGI


Results 1 - 20 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10711 3' -52.8 NC_002794.1 + 185032 1.15 0.002827
Target:  5'- aCCAGCUCCAAGUACGGCAGCAACAGCg -3'
miRNA:   3'- -GGUCGAGGUUCAUGCCGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 117070 0.88 0.160393
Target:  5'- -gAGCcUCGGGUACGGCGGCAGCGGCg -3'
miRNA:   3'- ggUCGaGGUUCAUGCCGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 46301 0.87 0.17764
Target:  5'- uCCGaacGUUCCGAGcGCGGCGGCGACGGCg -3'
miRNA:   3'- -GGU---CGAGGUUCaUGCCGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 70859 0.86 0.206595
Target:  5'- gCCGGcCUCCuccgGCGGCGGCAGCGGCg -3'
miRNA:   3'- -GGUC-GAGGuucaUGCCGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 32858 0.84 0.257605
Target:  5'- gCAGCggCCGAGccggcggGCGGCGGCGGCGGCg -3'
miRNA:   3'- gGUCGa-GGUUCa------UGCCGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 95823 0.83 0.297049
Target:  5'- gCGGCggCCGGGggaGCGGCGGCGGCGGCc -3'
miRNA:   3'- gGUCGa-GGUUCa--UGCCGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 20972 0.82 0.3112
Target:  5'- aCAGCUcaCCGGcaGCGGCGGCGGCAGCg -3'
miRNA:   3'- gGUCGA--GGUUcaUGCCGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 136393 0.82 0.330355
Target:  5'- aCCGGCUCCGGGUcgcgcgugcgcugaACGGCgguccauaaccggAGCGGCGGCu -3'
miRNA:   3'- -GGUCGAGGUUCA--------------UGCCG-------------UCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 194935 0.81 0.356692
Target:  5'- aCCAGCUCCG---ACGGCgacgucgucAGCAGCGGCa -3'
miRNA:   3'- -GGUCGAGGUucaUGCCG---------UCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 51052 0.81 0.372859
Target:  5'- cCCG--UCCGAG-ACGGCGGCGACGGCg -3'
miRNA:   3'- -GGUcgAGGUUCaUGCCGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 87348 0.81 0.372859
Target:  5'- cCCAGCagCGGGUcCGGCGGCgAGCGGCg -3'
miRNA:   3'- -GGUCGagGUUCAuGCCGUCG-UUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 195208 0.8 0.398027
Target:  5'- uCCAGCcccgCCAGcUGCGGCAGCAgcccgcGCGGCg -3'
miRNA:   3'- -GGUCGa---GGUUcAUGCCGUCGU------UGUCG- -5'
10711 3' -52.8 NC_002794.1 + 186990 0.8 0.401465
Target:  5'- aCCAGCUCCGccggcugcgucgucaGGUACGGCgucAGCGGguGCc -3'
miRNA:   3'- -GGUCGAGGU---------------UCAUGCCG---UCGUUguCG- -5'
10711 3' -52.8 NC_002794.1 + 94033 0.79 0.451498
Target:  5'- gCCGGCgggcCCGAGaGCGGCGGCGgugcggggGCGGCg -3'
miRNA:   3'- -GGUCGa---GGUUCaUGCCGUCGU--------UGUCG- -5'
10711 3' -52.8 NC_002794.1 + 23901 0.79 0.460788
Target:  5'- cCCGGgagCCGAGUGCaGCAGCGugGGCg -3'
miRNA:   3'- -GGUCga-GGUUCAUGcCGUCGUugUCG- -5'
10711 3' -52.8 NC_002794.1 + 125533 0.79 0.460788
Target:  5'- gCGGCgaaCGAGcGCGGCGGCAGCGGUu -3'
miRNA:   3'- gGUCGag-GUUCaUGCCGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 191650 0.79 0.470179
Target:  5'- uCCAGCagcccgCCGGGggACGGCgccGGCAGCGGCg -3'
miRNA:   3'- -GGUCGa-----GGUUCa-UGCCG---UCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 112826 0.79 0.470179
Target:  5'- cUCGGCcgCCGAGUACGGCuGCucguCGGCg -3'
miRNA:   3'- -GGUCGa-GGUUCAUGCCGuCGuu--GUCG- -5'
10711 3' -52.8 NC_002794.1 + 104576 0.78 0.489246
Target:  5'- aCCAGCUUCAGGUuguuGCGGCA-CGAguGCa -3'
miRNA:   3'- -GGUCGAGGUUCA----UGCCGUcGUUguCG- -5'
10711 3' -52.8 NC_002794.1 + 78363 0.78 0.498915
Target:  5'- gCAGCUCCAAc-ACGGCcugcuccgccAGCGACGGCg -3'
miRNA:   3'- gGUCGAGGUUcaUGCCG----------UCGUUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.