miRNA display CGI


Results 1 - 20 of 314 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10711 3' -52.8 NC_002794.1 + 555 0.7 0.893992
Target:  5'- cCCGGC-CUcGGcGCGGCGGUGGCAGg -3'
miRNA:   3'- -GGUCGaGGuUCaUGCCGUCGUUGUCg -5'
10711 3' -52.8 NC_002794.1 + 4432 0.66 0.984386
Target:  5'- cCCaAGCUCCAAGcuucCGGCcGauacGCGGCg -3'
miRNA:   3'- -GG-UCGAGGUUCau--GCCGuCgu--UGUCG- -5'
10711 3' -52.8 NC_002794.1 + 8106 0.7 0.899902
Target:  5'- uCUAGCgccaCCGAGcgggcgGCGGCcuccucggugaccGGCGACGGCa -3'
miRNA:   3'- -GGUCGa---GGUUCa-----UGCCG-------------UCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 8292 0.71 0.887203
Target:  5'- uCCAGCUCCGAcgaggAgGGCGaaGGCGGCa -3'
miRNA:   3'- -GGUCGAGGUUca---UgCCGUcgUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 9093 0.69 0.924385
Target:  5'- gCGGCgaCCGGGa---GCAGCAACAGCa -3'
miRNA:   3'- gGUCGa-GGUUCaugcCGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 10826 0.66 0.986129
Target:  5'- cCUGGCUCCGAG-ACGGCGcccuGCucguCAcGCu -3'
miRNA:   3'- -GGUCGAGGUUCaUGCCGU----CGuu--GU-CG- -5'
10711 3' -52.8 NC_002794.1 + 12204 0.71 0.865483
Target:  5'- gCC-GCUCgGAcGUGcCGGCGGCGucgGCGGCg -3'
miRNA:   3'- -GGuCGAGgUU-CAU-GCCGUCGU---UGUCG- -5'
10711 3' -52.8 NC_002794.1 + 12518 0.66 0.983832
Target:  5'- aCCGGCggCUggGUggauuggaaggaacGCGGCGcGC-ACGGCu -3'
miRNA:   3'- -GGUCGa-GGuuCA--------------UGCCGU-CGuUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 13278 0.71 0.880185
Target:  5'- gCGGCcgCUGuugACGGCGGCAugGGCg -3'
miRNA:   3'- gGUCGa-GGUucaUGCCGUCGUugUCG- -5'
10711 3' -52.8 NC_002794.1 + 13331 0.68 0.960507
Target:  5'- aCC-GCUCCcccGGU-CGGgGGUGGCGGCg -3'
miRNA:   3'- -GGuCGAGGu--UCAuGCCgUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 13486 0.72 0.816464
Target:  5'- cCCAGCgUCCGcuUGCGGCuGCAACccaacGCg -3'
miRNA:   3'- -GGUCG-AGGUucAUGCCGuCGUUGu----CG- -5'
10711 3' -52.8 NC_002794.1 + 13790 0.72 0.831048
Target:  5'- -uGGCUCCGgccgucuucgcgacGGgcccggcCGGCGGCGACGGCc -3'
miRNA:   3'- ggUCGAGGU--------------UCau-----GCCGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 14257 0.67 0.978158
Target:  5'- gCCGGCUcgaccccgaCCGAGguguuCGGCuggAGCGuCAGCg -3'
miRNA:   3'- -GGUCGA---------GGUUCau---GCCG---UCGUuGUCG- -5'
10711 3' -52.8 NC_002794.1 + 14480 0.66 0.982482
Target:  5'- gCCGcGCUCgcuGUucGCGGCGGCGgcccgcgcucGCGGCg -3'
miRNA:   3'- -GGU-CGAGguuCA--UGCCGUCGU----------UGUCG- -5'
10711 3' -52.8 NC_002794.1 + 14653 0.67 0.978852
Target:  5'- gCCGGCgccgcggcgucggUCCGAcucGCGGCGGCGgucgcgcugcuccugACGGCg -3'
miRNA:   3'- -GGUCG-------------AGGUUca-UGCCGUCGU---------------UGUCG- -5'
10711 3' -52.8 NC_002794.1 + 16831 0.73 0.79868
Target:  5'- gCAGCagCAGcaGCaGCAGCAGCAGCa -3'
miRNA:   3'- gGUCGagGUUcaUGcCGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 18541 0.69 0.94435
Target:  5'- gCgAGCa-CGAGcACGGCGGCGACcGCg -3'
miRNA:   3'- -GgUCGagGUUCaUGCCGUCGUUGuCG- -5'
10711 3' -52.8 NC_002794.1 + 18691 0.73 0.77088
Target:  5'- gCCGuCUCC-GGcACGGCGGCGGCGGUc -3'
miRNA:   3'- -GGUcGAGGuUCaUGCCGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 19441 0.78 0.538382
Target:  5'- aCCAgGCcCCGAGcgggcacgaGCGGCGGCGGCGGCg -3'
miRNA:   3'- -GGU-CGaGGUUCa--------UGCCGUCGUUGUCG- -5'
10711 3' -52.8 NC_002794.1 + 19778 0.66 0.982482
Target:  5'- aCCAGCUCCGGGUGCuccugacGCuGCuccgcucgGACcGCg -3'
miRNA:   3'- -GGUCGAGGUUCAUGc------CGuCG--------UUGuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.