miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10712 3' -53.3 NC_002794.1 + 181335 1.06 0.010503
Target:  5'- aACGACGAACGAAGUCAGACCCUCCAAu -3'
miRNA:   3'- -UGCUGCUUGCUUCAGUCUGGGAGGUU- -5'
10712 3' -53.3 NC_002794.1 + 65184 0.81 0.353814
Target:  5'- cCGGCGGgugccgGCGAGGUCGGACCCUCaCGAc -3'
miRNA:   3'- uGCUGCU------UGCUUCAGUCUGGGAG-GUU- -5'
10712 3' -53.3 NC_002794.1 + 106390 0.78 0.475926
Target:  5'- gACGGCGGGCGAacGGUCGGACCCcggcggcgCCGGg -3'
miRNA:   3'- -UGCUGCUUGCU--UCAGUCUGGGa-------GGUU- -5'
10712 3' -53.3 NC_002794.1 + 143827 0.74 0.677242
Target:  5'- cAUGGCGAGCGGccGGUCcGACgCCUCCGg -3'
miRNA:   3'- -UGCUGCUUGCU--UCAGuCUG-GGAGGUu -5'
10712 3' -53.3 NC_002794.1 + 17310 0.73 0.72766
Target:  5'- cACGACGGugACGAcGGUCAGGccgccggcgucCCCUCCGAc -3'
miRNA:   3'- -UGCUGCU--UGCU-UCAGUCU-----------GGGAGGUU- -5'
10712 3' -53.3 NC_002794.1 + 109168 0.73 0.766548
Target:  5'- gGCGACGAgcggcgguagcgGCGGAGgcagCGGGUCCUCCAAa -3'
miRNA:   3'- -UGCUGCU------------UGCUUCa---GUCUGGGAGGUU- -5'
10712 3' -53.3 NC_002794.1 + 145324 0.71 0.829601
Target:  5'- cGCGGCGGGCGgcGcUCGGGCCCgagcgggcCCGAg -3'
miRNA:   3'- -UGCUGCUUGCuuC-AGUCUGGGa-------GGUU- -5'
10712 3' -53.3 NC_002794.1 + 138732 0.71 0.846106
Target:  5'- cCGGCucGACGggGUCcccGGCCCUCCGGg -3'
miRNA:   3'- uGCUGc-UUGCuuCAGu--CUGGGAGGUU- -5'
10712 3' -53.3 NC_002794.1 + 54574 0.71 0.846106
Target:  5'- cGCuGCGAGCGGAucaccGUCuGAUCCUCCAGg -3'
miRNA:   3'- -UGcUGCUUGCUU-----CAGuCUGGGAGGUU- -5'
10712 3' -53.3 NC_002794.1 + 121606 0.7 0.897358
Target:  5'- gGCGACGAuuuCGAAGUCAuccggcuggacGAgUCUCCGGg -3'
miRNA:   3'- -UGCUGCUu--GCUUCAGU-----------CUgGGAGGUU- -5'
10712 3' -53.3 NC_002794.1 + 36630 0.69 0.90378
Target:  5'- gACGACGAACGccGUCGGcUCCggcagCCGAu -3'
miRNA:   3'- -UGCUGCUUGCuuCAGUCuGGGa----GGUU- -5'
10712 3' -53.3 NC_002794.1 + 79373 0.69 0.90378
Target:  5'- cACGcUGGACGAGGcgCAGACCCgUCCc- -3'
miRNA:   3'- -UGCuGCUUGCUUCa-GUCUGGG-AGGuu -5'
10712 3' -53.3 NC_002794.1 + 119982 0.69 0.909966
Target:  5'- uCGACGAGCGGAGccgCAG-CUCUUCGAc -3'
miRNA:   3'- uGCUGCUUGCUUCa--GUCuGGGAGGUU- -5'
10712 3' -53.3 NC_002794.1 + 181176 0.69 0.921619
Target:  5'- gACGGCGAACGg---CGGACaCUCCAAg -3'
miRNA:   3'- -UGCUGCUUGCuucaGUCUGgGAGGUU- -5'
10712 3' -53.3 NC_002794.1 + 135676 0.69 0.921619
Target:  5'- cACGACGGGCaggGGAGUCGuGACggUCUCCAGg -3'
miRNA:   3'- -UGCUGCUUG---CUUCAGU-CUG--GGAGGUU- -5'
10712 3' -53.3 NC_002794.1 + 53629 0.69 0.927083
Target:  5'- -gGACGGACGAGGUCGG-CCgagCCGg -3'
miRNA:   3'- ugCUGCUUGCUUCAGUCuGGga-GGUu -5'
10712 3' -53.3 NC_002794.1 + 107135 0.69 0.927083
Target:  5'- cGCGACGGgaACGAcGUCGGcGCCC-CCGg -3'
miRNA:   3'- -UGCUGCU--UGCUuCAGUC-UGGGaGGUu -5'
10712 3' -53.3 NC_002794.1 + 38571 0.69 0.932306
Target:  5'- cCGGCGccucGACGGAGUCGGcCgCCUCCu- -3'
miRNA:   3'- uGCUGC----UUGCUUCAGUCuG-GGAGGuu -5'
10712 3' -53.3 NC_002794.1 + 145617 0.69 0.934327
Target:  5'- cGCGACGAGgagcucggccCGGAGaUCGGACCCgagcucgucgucgggUCCGAu -3'
miRNA:   3'- -UGCUGCUU----------GCUUC-AGUCUGGG---------------AGGUU- -5'
10712 3' -53.3 NC_002794.1 + 86749 0.68 0.941564
Target:  5'- cGCGACGAGCGAAGccggguggaUCGccgggaacgaaccGGCCgCUCCGGa -3'
miRNA:   3'- -UGCUGCUUGCUUC---------AGU-------------CUGG-GAGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.