miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10712 3' -53.3 NC_002794.1 + 17026 0.68 0.950793
Target:  5'- gGCGGCGgucccAugGAAcUgAGACCCUCCGc -3'
miRNA:   3'- -UGCUGC-----UugCUUcAgUCUGGGAGGUu -5'
10712 3' -53.3 NC_002794.1 + 17310 0.73 0.72766
Target:  5'- cACGACGGugACGAcGGUCAGGccgccggcgucCCCUCCGAc -3'
miRNA:   3'- -UGCUGCU--UGCU-UCAGUCU-----------GGGAGGUU- -5'
10712 3' -53.3 NC_002794.1 + 20547 0.66 0.983385
Target:  5'- gACGACGGGCGAc--CGGAUCCcgCCGu -3'
miRNA:   3'- -UGCUGCUUGCUucaGUCUGGGa-GGUu -5'
10712 3' -53.3 NC_002794.1 + 30989 0.66 0.974094
Target:  5'- gGCGACG-GCGggGUCuucgccGGACgucgccgccgccuCCUCCGAg -3'
miRNA:   3'- -UGCUGCuUGCuuCAG------UCUG-------------GGAGGUU- -5'
10712 3' -53.3 NC_002794.1 + 36630 0.69 0.90378
Target:  5'- gACGACGAACGccGUCGGcUCCggcagCCGAu -3'
miRNA:   3'- -UGCUGCUUGCuuCAGUCuGGGa----GGUU- -5'
10712 3' -53.3 NC_002794.1 + 38571 0.69 0.932306
Target:  5'- cCGGCGccucGACGGAGUCGGcCgCCUCCu- -3'
miRNA:   3'- uGCUGC----UUGCUUCAGUCuG-GGAGGuu -5'
10712 3' -53.3 NC_002794.1 + 40122 0.68 0.946528
Target:  5'- cGCGA-GAGCGGAGagccaCGGGCUCUCCGc -3'
miRNA:   3'- -UGCUgCUUGCUUCa----GUCUGGGAGGUu -5'
10712 3' -53.3 NC_002794.1 + 53629 0.69 0.927083
Target:  5'- -gGACGGACGAGGUCGG-CCgagCCGg -3'
miRNA:   3'- ugCUGCUUGCUUCAGUCuGGga-GGUu -5'
10712 3' -53.3 NC_002794.1 + 54574 0.71 0.846106
Target:  5'- cGCuGCGAGCGGAucaccGUCuGAUCCUCCAGg -3'
miRNA:   3'- -UGcUGCUUGCUU-----CAGuCUGGGAGGUU- -5'
10712 3' -53.3 NC_002794.1 + 60959 0.67 0.969001
Target:  5'- uCGACGAGCGccGGgccuacgcgcgccucCGGACCCUCCu- -3'
miRNA:   3'- uGCUGCUUGCu-UCa--------------GUCUGGGAGGuu -5'
10712 3' -53.3 NC_002794.1 + 62500 0.66 0.979233
Target:  5'- gACGGCGGGCGgcGcCGccGGCgCCUCCGc -3'
miRNA:   3'- -UGCUGCUUGCuuCaGU--CUG-GGAGGUu -5'
10712 3' -53.3 NC_002794.1 + 65184 0.81 0.353814
Target:  5'- cCGGCGGgugccgGCGAGGUCGGACCCUCaCGAc -3'
miRNA:   3'- uGCUGCU------UGCUUCAGUCUGGGAG-GUU- -5'
10712 3' -53.3 NC_002794.1 + 73079 0.66 0.985209
Target:  5'- -gGACGGGCGcaccGUCaAGAUCUUCCAGg -3'
miRNA:   3'- ugCUGCUUGCuu--CAG-UCUGGGAGGUU- -5'
10712 3' -53.3 NC_002794.1 + 78331 0.66 0.985209
Target:  5'- cGCGACGGGCGGAggcgccggaauGUCGG-CCagcagCUCCAAc -3'
miRNA:   3'- -UGCUGCUUGCUU-----------CAGUCuGG-----GAGGUU- -5'
10712 3' -53.3 NC_002794.1 + 78392 0.67 0.958626
Target:  5'- gACGGCGAcgACGAGGccUCGccgcGACUCUCCGc -3'
miRNA:   3'- -UGCUGCU--UGCUUC--AGU----CUGGGAGGUu -5'
10712 3' -53.3 NC_002794.1 + 78812 0.66 0.985209
Target:  5'- aACGACG--UGAGGUCGGcCUgUCCGAu -3'
miRNA:   3'- -UGCUGCuuGCUUCAGUCuGGgAGGUU- -5'
10712 3' -53.3 NC_002794.1 + 79373 0.69 0.90378
Target:  5'- cACGcUGGACGAGGcgCAGACCCgUCCc- -3'
miRNA:   3'- -UGCuGCUUGCUUCa-GUCUGGG-AGGuu -5'
10712 3' -53.3 NC_002794.1 + 81576 0.68 0.946528
Target:  5'- cGCGcCGGACGAAGaagaagaCGGACCCgcggCCGGa -3'
miRNA:   3'- -UGCuGCUUGCUUCa------GUCUGGGa---GGUU- -5'
10712 3' -53.3 NC_002794.1 + 86749 0.68 0.941564
Target:  5'- cGCGACGAGCGAAGccggguggaUCGccgggaacgaaccGGCCgCUCCGGa -3'
miRNA:   3'- -UGCUGCUUGCUUC---------AGU-------------CUGG-GAGGUU- -5'
10712 3' -53.3 NC_002794.1 + 91379 0.68 0.946528
Target:  5'- uCGACGAgggcAUGAAG-CAGuuCCUCCAGg -3'
miRNA:   3'- uGCUGCU----UGCUUCaGUCugGGAGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.