miRNA display CGI


Results 21 - 40 of 440 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10713 3' -62.7 NC_002794.1 + 13823 0.68 0.594045
Target:  5'- gCGGCGACGGCcuccuCcuccuccuccccaccGCCUcgucgCCGCCGcCGCg -3'
miRNA:   3'- -GCCGCUGCCGc----G---------------CGGAa----GGUGGC-GCG- -5'
10713 3' -62.7 NC_002794.1 + 14458 0.67 0.647336
Target:  5'- gGGCGaccgugucgaGCGGCGCGCCgcgCuCGCUGUu- -3'
miRNA:   3'- gCCGC----------UGCCGCGCGGaa-G-GUGGCGcg -5'
10713 3' -62.7 NC_002794.1 + 14496 0.73 0.322603
Target:  5'- gCGGCGGCGGCccGCGCU---CGCgGCGCu -3'
miRNA:   3'- -GCCGCUGCCG--CGCGGaagGUGgCGCG- -5'
10713 3' -62.7 NC_002794.1 + 14534 0.66 0.704025
Target:  5'- uCGGCcACGGCGCucucGCCc-CCGucgaCGCGCg -3'
miRNA:   3'- -GCCGcUGCCGCG----CGGaaGGUg---GCGCG- -5'
10713 3' -62.7 NC_002794.1 + 14592 0.72 0.358119
Target:  5'- gGGCcguGGCGaGCGCGCCgggCACCGCGa -3'
miRNA:   3'- gCCG---CUGC-CGCGCGGaagGUGGCGCg -5'
10713 3' -62.7 NC_002794.1 + 14680 0.75 0.242811
Target:  5'- gCGGCGGCGGuCGCGCUgcUCCugACgGCGUg -3'
miRNA:   3'- -GCCGCUGCC-GCGCGGa-AGG--UGgCGCG- -5'
10713 3' -62.7 NC_002794.1 + 14785 0.67 0.666347
Target:  5'- cCGGCGAggcCGGCGUGaCCgcgaccacgUCaCGCCcCGCg -3'
miRNA:   3'- -GCCGCU---GCCGCGC-GGa--------AG-GUGGcGCG- -5'
10713 3' -62.7 NC_002794.1 + 15210 0.67 0.666347
Target:  5'- -cGCGAUGGCgGCGUCccCCGuCCGCGg -3'
miRNA:   3'- gcCGCUGCCG-CGCGGaaGGU-GGCGCg -5'
10713 3' -62.7 NC_002794.1 + 15271 0.72 0.350801
Target:  5'- uCGGCGAgCcGCGCGgCUcCCuCCGCGCg -3'
miRNA:   3'- -GCCGCU-GcCGCGCgGAaGGuGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 16541 0.76 0.211882
Target:  5'- cCGGCGucccCGGCGuCGCCaccgCCACCGcCGCc -3'
miRNA:   3'- -GCCGCu---GCCGC-GCGGaa--GGUGGC-GCG- -5'
10713 3' -62.7 NC_002794.1 + 17138 0.7 0.448794
Target:  5'- cCGGCGAaaCGGCgguaGCGCCcgugacgcucuacuuUUCCACCGaGCc -3'
miRNA:   3'- -GCCGCU--GCCG----CGCGG---------------AAGGUGGCgCG- -5'
10713 3' -62.7 NC_002794.1 + 17631 0.7 0.457342
Target:  5'- gCGGCGagcgaucccgccgccGCGGC-CGCCg-CCACCGcCGCc -3'
miRNA:   3'- -GCCGC---------------UGCCGcGCGGaaGGUGGC-GCG- -5'
10713 3' -62.7 NC_002794.1 + 18087 0.69 0.515791
Target:  5'- uCGGUGGCgcagaaGGCGCccaccGCCUUCCACCugaaCGUg -3'
miRNA:   3'- -GCCGCUG------CCGCG-----CGGAAGGUGGc---GCG- -5'
10713 3' -62.7 NC_002794.1 + 18260 0.68 0.571377
Target:  5'- cCGGCGaccgcgagaugcGCGGCGCcgaGCCUUCgaACCGaGCc -3'
miRNA:   3'- -GCCGC------------UGCCGCG---CGGAAGg-UGGCgCG- -5'
10713 3' -62.7 NC_002794.1 + 18703 0.67 0.632094
Target:  5'- aCGGCGGCGGCGguccggacgucggaGCCgacgagCCGCCccaaCGCc -3'
miRNA:   3'- -GCCGCUGCCGCg-------------CGGaa----GGUGGc---GCG- -5'
10713 3' -62.7 NC_002794.1 + 19331 0.7 0.471198
Target:  5'- uGGCGACccGCGCGCCggUCACCcccuCGCc -3'
miRNA:   3'- gCCGCUGc-CGCGCGGaaGGUGGc---GCG- -5'
10713 3' -62.7 NC_002794.1 + 19415 0.69 0.543351
Target:  5'- cCGGaucgGGCGCGCCcUCCuCCGCGa -3'
miRNA:   3'- -GCCgcugCCGCGCGGaAGGuGGCGCg -5'
10713 3' -62.7 NC_002794.1 + 19466 0.76 0.211882
Target:  5'- gCGGCGGCGGCGggaccCGCCggUCGCC-CGCa -3'
miRNA:   3'- -GCCGCUGCCGC-----GCGGaaGGUGGcGCG- -5'
10713 3' -62.7 NC_002794.1 + 19504 0.7 0.497734
Target:  5'- aCGGCGGaGGuCGCGCCgcucggagCGCCgGCGCg -3'
miRNA:   3'- -GCCGCUgCC-GCGCGGaag-----GUGG-CGCG- -5'
10713 3' -62.7 NC_002794.1 + 20986 0.69 0.506728
Target:  5'- gCGGCGGCGGCaGCGa---CCGCgGCGg -3'
miRNA:   3'- -GCCGCUGCCG-CGCggaaGGUGgCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.