miRNA display CGI


Results 1 - 20 of 440 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10713 3' -62.7 NC_002794.1 + 285 0.8 0.117157
Target:  5'- aCGGCGGCccuGGCGCGCCgaaCGCCGgGCc -3'
miRNA:   3'- -GCCGCUG---CCGCGCGGaagGUGGCgCG- -5'
10713 3' -62.7 NC_002794.1 + 620 0.74 0.264869
Target:  5'- aGGCGGCccgguguGGCGUucGCCUcccguccCCGCCGCGCa -3'
miRNA:   3'- gCCGCUG-------CCGCG--CGGAa------GGUGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 883 0.69 0.524918
Target:  5'- uCGGCGuGCGcGCGgGCCgggugCCAacgccgcuccCCGCGCc -3'
miRNA:   3'- -GCCGC-UGC-CGCgCGGaa---GGU----------GGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 2098 0.74 0.283541
Target:  5'- aCGGCGAcCGGgGCGUgUUCUAucuacgguCCGCGCc -3'
miRNA:   3'- -GCCGCU-GCCgCGCGgAAGGU--------GGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 4223 0.68 0.580801
Target:  5'- cCGGUGugGGCGUGUCUagaCGuCgGUGCg -3'
miRNA:   3'- -GCCGCugCCGCGCGGAag-GU-GgCGCG- -5'
10713 3' -62.7 NC_002794.1 + 8143 0.7 0.444553
Target:  5'- cCGGCGACGGCacCGCUUcuccuucUCCcCCGgGCc -3'
miRNA:   3'- -GCCGCUGCCGc-GCGGA-------AGGuGGCgCG- -5'
10713 3' -62.7 NC_002794.1 + 8309 0.73 0.34359
Target:  5'- gGGCGAaGGCG-GCa--CCGCCGCGCc -3'
miRNA:   3'- gCCGCUgCCGCgCGgaaGGUGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 8634 0.68 0.580801
Target:  5'- gCGGUggaaGACGuGCGCGCCaagcuggggaCCACCGUGa -3'
miRNA:   3'- -GCCG----CUGC-CGCGCGGaa--------GGUGGCGCg -5'
10713 3' -62.7 NC_002794.1 + 10769 0.66 0.731755
Target:  5'- aCGGCGGCGuggagcugcaGUGCGCCaUCgCGaacaccgagaacCUGCGCa -3'
miRNA:   3'- -GCCGCUGC----------CGCGCGGaAG-GU------------GGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 11098 0.7 0.483495
Target:  5'- uCGGCGccaccuuccugcucuACGGCGUGCUgcgccaacgCCACC-CGCa -3'
miRNA:   3'- -GCCGC---------------UGCCGCGCGGaa-------GGUGGcGCG- -5'
10713 3' -62.7 NC_002794.1 + 11794 0.69 0.515791
Target:  5'- gCGGUGuccgUGGCGcCGCCg-CCGCCGuCGCc -3'
miRNA:   3'- -GCCGCu---GCCGC-GCGGaaGGUGGC-GCG- -5'
10713 3' -62.7 NC_002794.1 + 11861 0.67 0.628283
Target:  5'- cCGGCGACGaC-CGCCcgCC-CCGCGa -3'
miRNA:   3'- -GCCGCUGCcGcGCGGaaGGuGGCGCg -5'
10713 3' -62.7 NC_002794.1 + 12027 0.66 0.679601
Target:  5'- cCGGCccgGGCGucCGCGCCUuccccugccgguaucUCUggGCCGCGCc -3'
miRNA:   3'- -GCCG---CUGCc-GCGCGGA---------------AGG--UGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 12230 0.83 0.079033
Target:  5'- gCGGCGcCGGCgGCGCCgUCCGCgGCGCc -3'
miRNA:   3'- -GCCGCuGCCG-CGCGGaAGGUGgCGCG- -5'
10713 3' -62.7 NC_002794.1 + 12359 0.68 0.599737
Target:  5'- -cGCGucacguaccuCGGCGUGCUcgCCuGCCGCGCu -3'
miRNA:   3'- gcCGCu---------GCCGCGCGGaaGG-UGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 12528 0.72 0.387667
Target:  5'- gGGUGgauuggaaggaacGCGGCGCGCaCggCUACCgGCGCa -3'
miRNA:   3'- gCCGC-------------UGCCGCGCG-GaaGGUGG-CGCG- -5'
10713 3' -62.7 NC_002794.1 + 12707 0.75 0.237406
Target:  5'- uCGGcCGugGGCuGCGCgUUCCGCgGCGa -3'
miRNA:   3'- -GCC-GCugCCG-CGCGgAAGGUGgCGCg -5'
10713 3' -62.7 NC_002794.1 + 12968 0.67 0.628283
Target:  5'- uCGGUGAC-GUG-GCCUUCUuccuccugGCCGUGCu -3'
miRNA:   3'- -GCCGCUGcCGCgCGGAAGG--------UGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 13100 0.67 0.647336
Target:  5'- gGGgGACgaGGUGCGUUcggcggggUCGCCGCGCg -3'
miRNA:   3'- gCCgCUG--CCGCGCGGaa------GGUGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 13348 0.68 0.590256
Target:  5'- gGGUGGCGGCGC-CCcUCgC-CCGgGCc -3'
miRNA:   3'- gCCGCUGCCGCGcGGaAG-GuGGCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.