miRNA display CGI


Results 1 - 20 of 440 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10713 3' -62.7 NC_002794.1 + 181236 1.11 0.000798
Target:  5'- cCGGCGACGGCGCGCCUUCCACCGCGCg -3'
miRNA:   3'- -GCCGCUGCCGCGCGGAAGGUGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 34339 0.86 0.044363
Target:  5'- aGGCGACGGcCGCGCCgUUCCGCC-CGCu -3'
miRNA:   3'- gCCGCUGCC-GCGCGG-AAGGUGGcGCG- -5'
10713 3' -62.7 NC_002794.1 + 54991 0.84 0.060041
Target:  5'- gCGGCGACGGCGgcgacuCGCCgggcgUCCGCCGcCGCg -3'
miRNA:   3'- -GCCGCUGCCGC------GCGGa----AGGUGGC-GCG- -5'
10713 3' -62.7 NC_002794.1 + 67018 0.84 0.066373
Target:  5'- cCGGCGGCGGCG-GCCggcucCCGCCGCGUc -3'
miRNA:   3'- -GCCGCUGCCGCgCGGaa---GGUGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 115928 0.83 0.077092
Target:  5'- gGcGCGGCGGCGgGCCggcCCGCCGCGUg -3'
miRNA:   3'- gC-CGCUGCCGCgCGGaa-GGUGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 12230 0.83 0.079033
Target:  5'- gCGGCGcCGGCgGCGCCgUCCGCgGCGCc -3'
miRNA:   3'- -GCCGCuGCCG-CGCGGaAGGUGgCGCG- -5'
10713 3' -62.7 NC_002794.1 + 60640 0.82 0.087273
Target:  5'- cCGGCGcCGGCgGCGCCggCCACCcgGCGCg -3'
miRNA:   3'- -GCCGCuGCCG-CGCGGaaGGUGG--CGCG- -5'
10713 3' -62.7 NC_002794.1 + 113178 0.82 0.089237
Target:  5'- gCGGCGGCGGUcgcggagGCGCC-UCCGCCGcCGCc -3'
miRNA:   3'- -GCCGCUGCCG-------CGCGGaAGGUGGC-GCG- -5'
10713 3' -62.7 NC_002794.1 + 186491 0.82 0.091694
Target:  5'- gGGCccGGCGGCGCGCCUccCCGCCGUGg -3'
miRNA:   3'- gCCG--CUGCCGCGCGGAa-GGUGGCGCg -5'
10713 3' -62.7 NC_002794.1 + 102154 0.82 0.091694
Target:  5'- uCGGCGGCGuGCGCGCCggggCCAUcguggCGCGCg -3'
miRNA:   3'- -GCCGCUGC-CGCGCGGaa--GGUG-----GCGCG- -5'
10713 3' -62.7 NC_002794.1 + 151583 0.81 0.098725
Target:  5'- cCGGCGGC-GCGCGCCg-CCGCCGCGg -3'
miRNA:   3'- -GCCGCUGcCGCGCGGaaGGUGGCGCg -5'
10713 3' -62.7 NC_002794.1 + 285 0.8 0.117157
Target:  5'- aCGGCGGCccuGGCGCGCCgaaCGCCGgGCc -3'
miRNA:   3'- -GCCGCUG---CCGCGCGGaagGUGGCgCG- -5'
10713 3' -62.7 NC_002794.1 + 50773 0.8 0.117157
Target:  5'- gCGGCGACGGCGCGUCUcggGCgGCGCc -3'
miRNA:   3'- -GCCGCUGCCGCGCGGAaggUGgCGCG- -5'
10713 3' -62.7 NC_002794.1 + 108405 0.8 0.120039
Target:  5'- cCGGCGGCGGCGC-CCa-CCACgGCGCc -3'
miRNA:   3'- -GCCGCUGCCGCGcGGaaGGUGgCGCG- -5'
10713 3' -62.7 NC_002794.1 + 99597 0.8 0.120039
Target:  5'- gCGGCGGCGGCGCGCgcUCgCGCCGCc- -3'
miRNA:   3'- -GCCGCUGCCGCGCGgaAG-GUGGCGcg -5'
10713 3' -62.7 NC_002794.1 + 124406 0.79 0.129085
Target:  5'- cCGGuCGuCGGgGCGCCgUCCGCCGCGg -3'
miRNA:   3'- -GCC-GCuGCCgCGCGGaAGGUGGCGCg -5'
10713 3' -62.7 NC_002794.1 + 51386 0.79 0.132238
Target:  5'- cCGGCGACaGGCGC-CCUccgggCuCACCGCGCa -3'
miRNA:   3'- -GCCGCUG-CCGCGcGGAa----G-GUGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 52170 0.79 0.135462
Target:  5'- gCGGCGGCGGUGCGCa--UCGCCuGCGCc -3'
miRNA:   3'- -GCCGCUGCCGCGCGgaaGGUGG-CGCG- -5'
10713 3' -62.7 NC_002794.1 + 120089 0.79 0.145571
Target:  5'- gCGGCGACGacCGUGCCgagCgCGCCGCGCg -3'
miRNA:   3'- -GCCGCUGCc-GCGCGGaa-G-GUGGCGCG- -5'
10713 3' -62.7 NC_002794.1 + 78009 0.78 0.149091
Target:  5'- cCGGCGGCGGCGCcgucgggagaacGCCcgCCGCCGCc- -3'
miRNA:   3'- -GCCGCUGCCGCG------------CGGaaGGUGGCGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.