miRNA display CGI


Results 21 - 40 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10713 5' -54.7 NC_002794.1 + 23886 0.68 0.906123
Target:  5'- -cGCGAAcGCCGAGG-GC-CCGgGAGCc -3'
miRNA:   3'- cuUGCUU-CGGCUCCaUGcGGCgCUUG- -5'
10713 5' -54.7 NC_002794.1 + 27238 0.66 0.959421
Target:  5'- cGAugGAGGCCGAcgugaacuuuauGGaccacuCGCCGCacGGACu -3'
miRNA:   3'- -CUugCUUCGGCU------------CCau----GCGGCG--CUUG- -5'
10713 5' -54.7 NC_002794.1 + 32422 0.7 0.85002
Target:  5'- -cACGAAGCUGAGauucUGCGCgGCGAu- -3'
miRNA:   3'- cuUGCUUCGGCUCc---AUGCGgCGCUug -5'
10713 5' -54.7 NC_002794.1 + 32597 0.7 0.85002
Target:  5'- --cCGggGCCGGGGccgGgGCCGgGGAUc -3'
miRNA:   3'- cuuGCuuCGGCUCCa--UgCGGCgCUUG- -5'
10713 5' -54.7 NC_002794.1 + 34857 0.81 0.304049
Target:  5'- gGAGCGGGcGCCGcGG-GCGCCGCGGACg -3'
miRNA:   3'- -CUUGCUU-CGGCuCCaUGCGGCGCUUG- -5'
10713 5' -54.7 NC_002794.1 + 37602 0.75 0.55368
Target:  5'- cGAUGGAGCCGcaccgagaAGGUgACGUCGCGGACc -3'
miRNA:   3'- cUUGCUUCGGC--------UCCA-UGCGGCGCUUG- -5'
10713 5' -54.7 NC_002794.1 + 41064 0.66 0.9629
Target:  5'- --uCGggGUUcGGGUGC-CCGCGAAUg -3'
miRNA:   3'- cuuGCuuCGGcUCCAUGcGGCGCUUG- -5'
10713 5' -54.7 NC_002794.1 + 42663 0.72 0.713748
Target:  5'- cGACGgcGCCGccggcacgGGGUACGCCgagaccgGCGAGCc -3'
miRNA:   3'- cUUGCuuCGGC--------UCCAUGCGG-------CGCUUG- -5'
10713 5' -54.7 NC_002794.1 + 44065 0.66 0.961879
Target:  5'- cGACaGAAGCCGcucguggugacAuaccgggcaguaacGGUGCGCCGaCGAGCg -3'
miRNA:   3'- cUUG-CUUCGGC-----------U--------------CCAUGCGGC-GCUUG- -5'
10713 5' -54.7 NC_002794.1 + 44196 0.71 0.808488
Target:  5'- cGGGCGAAGCCGGGccgACGuCCGgcuCGGGCg -3'
miRNA:   3'- -CUUGCUUCGGCUCca-UGC-GGC---GCUUG- -5'
10713 5' -54.7 NC_002794.1 + 44305 0.76 0.514431
Target:  5'- cGGCGAGG-CGGGGaGCGaCCGCGAGCg -3'
miRNA:   3'- cUUGCUUCgGCUCCaUGC-GGCGCUUG- -5'
10713 5' -54.7 NC_002794.1 + 44353 0.67 0.938678
Target:  5'- cGGCGAGaCCGAGa-GCGCgGCGGGCg -3'
miRNA:   3'- cUUGCUUcGGCUCcaUGCGgCGCUUG- -5'
10713 5' -54.7 NC_002794.1 + 46324 0.71 0.790721
Target:  5'- cGACGgcGCCGu----CGCCGCGGACg -3'
miRNA:   3'- cUUGCuuCGGCuccauGCGGCGCUUG- -5'
10713 5' -54.7 NC_002794.1 + 47357 0.66 0.966165
Target:  5'- cGGACGuucgcgcucAAGCCGAGGccgaGCC-CGAGCc -3'
miRNA:   3'- -CUUGC---------UUCGGCUCCaug-CGGcGCUUG- -5'
10713 5' -54.7 NC_002794.1 + 47405 0.66 0.959421
Target:  5'- --cCGAAGCCGccGUcgGCGCCGUcgcgcgGAGCg -3'
miRNA:   3'- cuuGCUUCGGCucCA--UGCGGCG------CUUG- -5'
10713 5' -54.7 NC_002794.1 + 48475 0.66 0.9629
Target:  5'- aGGGCGAAGCCGccGGGcaGCGCCcaCGAcACg -3'
miRNA:   3'- -CUUGCUUCGGC--UCCa-UGCGGc-GCU-UG- -5'
10713 5' -54.7 NC_002794.1 + 49517 0.68 0.912134
Target:  5'- ------cGCCG-GGUacauggguucgcGCGCCGCGAGCa -3'
miRNA:   3'- cuugcuuCGGCuCCA------------UGCGGCGCUUG- -5'
10713 5' -54.7 NC_002794.1 + 49652 0.66 0.955724
Target:  5'- cGGCGAGucccgcGCCGAccGGUACGCgaagcgcaaGCGGACg -3'
miRNA:   3'- cUUGCUU------CGGCU--CCAUGCGg--------CGCUUG- -5'
10713 5' -54.7 NC_002794.1 + 50653 0.72 0.72457
Target:  5'- uGAGCGAaaacauggcGGCCGcGGcgcuCGCCGCGAAUc -3'
miRNA:   3'- -CUUGCU---------UCGGCuCCau--GCGGCGCUUG- -5'
10713 5' -54.7 NC_002794.1 + 53285 0.7 0.81714
Target:  5'- cGAGCGAccacuccagguGCCGAGcGgucggccgGCGCCGCGAGa -3'
miRNA:   3'- -CUUGCUu----------CGGCUC-Ca-------UGCGGCGCUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.