miRNA display CGI


Results 1 - 20 of 160 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10713 5' -54.7 NC_002794.1 + 1 0.7 0.825627
Target:  5'- ---CGAGcGCCGAGacGCgGCCGCGAACa -3'
miRNA:   3'- cuuGCUU-CGGCUCcaUG-CGGCGCUUG- -5'
10713 5' -54.7 NC_002794.1 + 25 0.7 0.857772
Target:  5'- -nACGAAaaCGAGGc-CGCCGCGGGCu -3'
miRNA:   3'- cuUGCUUcgGCUCCauGCGGCGCUUG- -5'
10713 5' -54.7 NC_002794.1 + 131 0.66 0.969223
Target:  5'- cGAcCGGAGCCcGGGacCGCCGCagGGGCg -3'
miRNA:   3'- -CUuGCUUCGGcUCCauGCGGCG--CUUG- -5'
10713 5' -54.7 NC_002794.1 + 8535 0.66 0.964231
Target:  5'- -cACGAAGUCuGGGaGCagaccguccgcgccuGCCGCGAACu -3'
miRNA:   3'- cuUGCUUCGGcUCCaUG---------------CGGCGCUUG- -5'
10713 5' -54.7 NC_002794.1 + 10321 0.73 0.704831
Target:  5'- cGACGAcucGGCCGucGUcgGCGCCGCGAc- -3'
miRNA:   3'- cUUGCU---UCGGCucCA--UGCGGCGCUug -5'
10713 5' -54.7 NC_002794.1 + 10777 0.66 0.955724
Target:  5'- --gUGGAGCUGcaGUGCGCCaucGCGAACa -3'
miRNA:   3'- cuuGCUUCGGCucCAUGCGG---CGCUUG- -5'
10713 5' -54.7 NC_002794.1 + 12184 0.68 0.923456
Target:  5'- cGACGccGCCGcGGccggGCGCCGCucGGACg -3'
miRNA:   3'- cUUGCuuCGGCuCCa---UGCGGCG--CUUG- -5'
10713 5' -54.7 NC_002794.1 + 13102 0.72 0.743996
Target:  5'- gGGACGAGGUgcguucggCGGGGU-CGCCGCGcGGCu -3'
miRNA:   3'- -CUUGCUUCG--------GCUCCAuGCGGCGC-UUG- -5'
10713 5' -54.7 NC_002794.1 + 14457 0.66 0.966165
Target:  5'- cGGGCGAccguGUCGAgcGGcGCGCCGCGcuCg -3'
miRNA:   3'- -CUUGCUu---CGGCU--CCaUGCGGCGCuuG- -5'
10713 5' -54.7 NC_002794.1 + 14570 0.67 0.947232
Target:  5'- aGGCGAgccGGCCGAccgaagcGGgcCGUgGCGAGCg -3'
miRNA:   3'- cUUGCU---UCGGCU-------CCauGCGgCGCUUG- -5'
10713 5' -54.7 NC_002794.1 + 14631 0.73 0.7088
Target:  5'- aGACGggGCCGGGcacggagacgccgGCGCCGCGGc- -3'
miRNA:   3'- cUUGCuuCGGCUCca-----------UGCGGCGCUug -5'
10713 5' -54.7 NC_002794.1 + 14786 0.68 0.928765
Target:  5'- cGGCGAGGCCGGcGUGa-CCGCGAccACg -3'
miRNA:   3'- cUUGCUUCGGCUcCAUgcGGCGCU--UG- -5'
10713 5' -54.7 NC_002794.1 + 14866 0.7 0.81714
Target:  5'- -uACGccAGCCGcccGGUuCGCCGCGAGCc -3'
miRNA:   3'- cuUGCu-UCGGCu--CCAuGCGGCGCUUG- -5'
10713 5' -54.7 NC_002794.1 + 16158 0.66 0.969223
Target:  5'- --uCGGAGCCGgcaugaacggcGGGUGgcCGaCCGUGAACu -3'
miRNA:   3'- cuuGCUUCGGC-----------UCCAU--GC-GGCGCUUG- -5'
10713 5' -54.7 NC_002794.1 + 17459 0.71 0.799679
Target:  5'- cGAcCGAGGUCGaAGGUucgcuccacACGCCGCGuuuGCg -3'
miRNA:   3'- -CUuGCUUCGGC-UCCA---------UGCGGCGCu--UG- -5'
10713 5' -54.7 NC_002794.1 + 19499 0.75 0.573643
Target:  5'- cGACGAcGGCgGAGGUcGCGCCGCucgGAGCg -3'
miRNA:   3'- cUUGCU-UCGgCUCCA-UGCGGCG---CUUG- -5'
10713 5' -54.7 NC_002794.1 + 19885 0.68 0.912134
Target:  5'- -uGCGuGGCCGAccgcUGCCGCGAGCa -3'
miRNA:   3'- cuUGCuUCGGCUccauGCGGCGCUUG- -5'
10713 5' -54.7 NC_002794.1 + 20409 0.68 0.922912
Target:  5'- gGAGCGggGCCacacGGUcuaccccGCGCCGgaGGACg -3'
miRNA:   3'- -CUUGCuuCGGcu--CCA-------UGCGGCg-CUUG- -5'
10713 5' -54.7 NC_002794.1 + 21734 0.7 0.857772
Target:  5'- -cGCGAGGCCGAagcGGUGCGCCu----- -3'
miRNA:   3'- cuUGCUUCGGCU---CCAUGCGGcgcuug -5'
10713 5' -54.7 NC_002794.1 + 22717 0.67 0.933839
Target:  5'- -cGCGgcGCCGAGa---GCCGgCGAACg -3'
miRNA:   3'- cuUGCuuCGGCUCcaugCGGC-GCUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.