miRNA display CGI


Results 1 - 20 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10713 5' -54.7 NC_002794.1 + 181270 1.1 0.004032
Target:  5'- cGAACGAAGCCGAGGUACGCCGCGAACa -3'
miRNA:   3'- -CUUGCUUCGGCUCCAUGCGGCGCUUG- -5'
10713 5' -54.7 NC_002794.1 + 86754 0.84 0.193142
Target:  5'- cGAGCGAAGCCG-GGUGgauCGCCGgGAACg -3'
miRNA:   3'- -CUUGCUUCGGCuCCAU---GCGGCgCUUG- -5'
10713 5' -54.7 NC_002794.1 + 105954 0.82 0.264483
Target:  5'- -uACGAacGGCUGGGGgcCGCCGCGGACg -3'
miRNA:   3'- cuUGCU--UCGGCUCCauGCGGCGCUUG- -5'
10713 5' -54.7 NC_002794.1 + 34857 0.81 0.304049
Target:  5'- gGAGCGGGcGCCGcGG-GCGCCGCGGACg -3'
miRNA:   3'- -CUUGCUU-CGGCuCCaUGCGGCGCUUG- -5'
10713 5' -54.7 NC_002794.1 + 95322 0.79 0.355763
Target:  5'- cAGCGAGGCCGAGGacacgcUGCGCCGCu-ACa -3'
miRNA:   3'- cUUGCUUCGGCUCC------AUGCGGCGcuUG- -5'
10713 5' -54.7 NC_002794.1 + 185363 0.78 0.413362
Target:  5'- cGAGCG-GGCCGA---ACGCCGCGAGCg -3'
miRNA:   3'- -CUUGCuUCGGCUccaUGCGGCGCUUG- -5'
10713 5' -54.7 NC_002794.1 + 66963 0.77 0.476363
Target:  5'- cGGCGAGucgcucGCCGGGGgaGCGUCGCGAGCa -3'
miRNA:   3'- cUUGCUU------CGGCUCCa-UGCGGCGCUUG- -5'
10713 5' -54.7 NC_002794.1 + 44305 0.76 0.514431
Target:  5'- cGGCGAGG-CGGGGaGCGaCCGCGAGCg -3'
miRNA:   3'- cUUGCUUCgGCUCCaUGC-GGCGCUUG- -5'
10713 5' -54.7 NC_002794.1 + 141432 0.76 0.543774
Target:  5'- cGGCGGGggcGCCGGGG-GCGCCGgGAGCg -3'
miRNA:   3'- cUUGCUU---CGGCUCCaUGCGGCgCUUG- -5'
10713 5' -54.7 NC_002794.1 + 37602 0.75 0.55368
Target:  5'- cGAUGGAGCCGcaccgagaAGGUgACGUCGCGGACc -3'
miRNA:   3'- cUUGCUUCGGC--------UCCA-UGCGGCGCUUG- -5'
10713 5' -54.7 NC_002794.1 + 72015 0.75 0.55368
Target:  5'- cGAgGAAGCCGAGGUcgcGCaGCCGCuuGAGCu -3'
miRNA:   3'- cUUgCUUCGGCUCCA---UG-CGGCG--CUUG- -5'
10713 5' -54.7 NC_002794.1 + 55959 0.75 0.55368
Target:  5'- gGAACGGguaguAGUCGAGGUGgauggcguaGCCGCGGGCg -3'
miRNA:   3'- -CUUGCU-----UCGGCUCCAUg--------CGGCGCUUG- -5'
10713 5' -54.7 NC_002794.1 + 147038 0.75 0.557657
Target:  5'- aGGACGAAGCCGucggcggccggucuaAGGacggaGCCGCGGGCg -3'
miRNA:   3'- -CUUGCUUCGGC---------------UCCaug--CGGCGCUUG- -5'
10713 5' -54.7 NC_002794.1 + 126677 0.75 0.57264
Target:  5'- cGGCGAgGGCCcgaaucggggaggGAGGgGCGCCGCGGACu -3'
miRNA:   3'- cUUGCU-UCGG-------------CUCCaUGCGGCGCUUG- -5'
10713 5' -54.7 NC_002794.1 + 19499 0.75 0.573643
Target:  5'- cGACGAcGGCgGAGGUcGCGCCGCucgGAGCg -3'
miRNA:   3'- cUUGCU-UCGgCUCCA-UGCGGCG---CUUG- -5'
10713 5' -54.7 NC_002794.1 + 91229 0.74 0.634296
Target:  5'- cGGACGGcgcggcGGCCGucGGGcUGCGCuCGCGGACg -3'
miRNA:   3'- -CUUGCU------UCGGC--UCC-AUGCG-GCGCUUG- -5'
10713 5' -54.7 NC_002794.1 + 150095 0.74 0.644442
Target:  5'- uGGGCGGAGCgUGAGGccggaGCGCCGCucGAACa -3'
miRNA:   3'- -CUUGCUUCG-GCUCCa----UGCGGCG--CUUG- -5'
10713 5' -54.7 NC_002794.1 + 183593 0.74 0.644442
Target:  5'- cGGugGggGCgGAGGgGgGCCGCGcGCg -3'
miRNA:   3'- -CUugCuuCGgCUCCaUgCGGCGCuUG- -5'
10713 5' -54.7 NC_002794.1 + 116106 0.73 0.664698
Target:  5'- gGGGuCGAGGUCGAGGUcgagucCGCCGCGGcgGCg -3'
miRNA:   3'- -CUU-GCUUCGGCUCCAu-----GCGGCGCU--UG- -5'
10713 5' -54.7 NC_002794.1 + 123451 0.73 0.671767
Target:  5'- cGAGCGGcuGGCCGAGcaccuguacuacgagGCGCUGCGGACc -3'
miRNA:   3'- -CUUGCU--UCGGCUCca-------------UGCGGCGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.