Results 41 - 55 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10714 | 3' | -57.9 | NC_002794.1 | + | 62765 | 0.7 | 0.6233 |
Target: 5'- cGGCuCCGGCuGUUUCgccgcgcgCCGCCUCCGg -3' miRNA: 3'- cUCGuGGUCG-CGAAGaa------GGCGGAGGU- -5' |
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10714 | 3' | -57.9 | NC_002794.1 | + | 116889 | 0.71 | 0.603176 |
Target: 5'- gGGGCGCCGGCGCcgUCUccggCgGCCggUCCGg -3' miRNA: 3'- -CUCGUGGUCGCGa-AGAa---GgCGG--AGGU- -5' |
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10714 | 3' | -57.9 | NC_002794.1 | + | 38564 | 0.71 | 0.603176 |
Target: 5'- aAGCccGCCGGCGCcucgacggagUCggCCGCCUCCu -3' miRNA: 3'- cUCG--UGGUCGCGa---------AGaaGGCGGAGGu -5' |
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10714 | 3' | -57.9 | NC_002794.1 | + | 63709 | 0.71 | 0.603176 |
Target: 5'- cGGCGCCGGCGCcgCcggaCCGCCgaUCCAa -3' miRNA: 3'- cUCGUGGUCGCGaaGaa--GGCGG--AGGU- -5' |
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10714 | 3' | -57.9 | NC_002794.1 | + | 112591 | 0.71 | 0.593141 |
Target: 5'- -uGCGCCAGgGCccgUUCgaaCGCCUCCAc -3' miRNA: 3'- cuCGUGGUCgCG---AAGaagGCGGAGGU- -5' |
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10714 | 3' | -57.9 | NC_002794.1 | + | 19525 | 0.71 | 0.583134 |
Target: 5'- gGAGCGCCGGCGCggCgcggcCCGCCggugUCGg -3' miRNA: 3'- -CUCGUGGUCGCGaaGaa---GGCGGa---GGU- -5' |
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10714 | 3' | -57.9 | NC_002794.1 | + | 80537 | 0.71 | 0.563229 |
Target: 5'- uGGCACCGGCGCcUCUUCC-CCgcggacCCGu -3' miRNA: 3'- cUCGUGGUCGCGaAGAAGGcGGa-----GGU- -5' |
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10714 | 3' | -57.9 | NC_002794.1 | + | 99812 | 0.72 | 0.54351 |
Target: 5'- cGGGCGCCGGCGCcgUCggCCGaCCUgCu -3' miRNA: 3'- -CUCGUGGUCGCGa-AGaaGGC-GGAgGu -5' |
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10714 | 3' | -57.9 | NC_002794.1 | + | 84184 | 0.72 | 0.514378 |
Target: 5'- cGGC-CCGGCGC-UCggcCCGCCUCCc -3' miRNA: 3'- cUCGuGGUCGCGaAGaa-GGCGGAGGu -5' |
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10714 | 3' | -57.9 | NC_002794.1 | + | 38498 | 0.72 | 0.504808 |
Target: 5'- -cGCGgCGGCGCcggUCgccgCCGCCUCCGc -3' miRNA: 3'- cuCGUgGUCGCGa--AGaa--GGCGGAGGU- -5' |
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10714 | 3' | -57.9 | NC_002794.1 | + | 148204 | 0.74 | 0.440206 |
Target: 5'- cGGCGCCGGCGCgcgCUcgaUCgGUCUCCGg -3' miRNA: 3'- cUCGUGGUCGCGaa-GA---AGgCGGAGGU- -5' |
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10714 | 3' | -57.9 | NC_002794.1 | + | 106266 | 0.74 | 0.405466 |
Target: 5'- cGAGCGCC-GCGCgUCgcgCCGCCUCgGa -3' miRNA: 3'- -CUCGUGGuCGCGaAGaa-GGCGGAGgU- -5' |
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10714 | 3' | -57.9 | NC_002794.1 | + | 113115 | 0.75 | 0.372503 |
Target: 5'- -uGCACCuGGCGCUUC-UCCGUgUCCGa -3' miRNA: 3'- cuCGUGG-UCGCGAAGaAGGCGgAGGU- -5' |
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10714 | 3' | -57.9 | NC_002794.1 | + | 68951 | 0.75 | 0.349005 |
Target: 5'- cGGCGCCGGCGCcUCUcCCuCCUCCGc -3' miRNA: 3'- cUCGUGGUCGCGaAGAaGGcGGAGGU- -5' |
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10714 | 3' | -57.9 | NC_002794.1 | + | 181133 | 1.08 | 0.002488 |
Target: 5'- gGAGCACCAGCGCUUCUUCCGCCUCCAg -3' miRNA: 3'- -CUCGUGGUCGCGAAGAAGGCGGAGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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