miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10714 3' -57.9 NC_002794.1 + 84184 0.72 0.514378
Target:  5'- cGGC-CCGGCGC-UCggcCCGCCUCCc -3'
miRNA:   3'- cUCGuGGUCGCGaAGaa-GGCGGAGGu -5'
10714 3' -57.9 NC_002794.1 + 84297 0.66 0.844869
Target:  5'- gGAGCGgCGGCGCUUCcuggcgaccgggCCGCCcgagagCCGc -3'
miRNA:   3'- -CUCGUgGUCGCGAAGaa----------GGCGGa-----GGU- -5'
10714 3' -57.9 NC_002794.1 + 86699 0.66 0.870667
Target:  5'- cGAGC-CCGGuCGCUcgUCgaagCCGCCcggCCAc -3'
miRNA:   3'- -CUCGuGGUC-GCGA--AGaa--GGCGGa--GGU- -5'
10714 3' -57.9 NC_002794.1 + 99272 0.69 0.673591
Target:  5'- gGGGCuCCGGCGCgcucccgggcUCUUCCGCgaCCGc -3'
miRNA:   3'- -CUCGuGGUCGCGa---------AGAAGGCGgaGGU- -5'
10714 3' -57.9 NC_002794.1 + 99598 0.68 0.742371
Target:  5'- cGGCGgCGGCGCgcgcUCgcgCCGCCUCg- -3'
miRNA:   3'- cUCGUgGUCGCGa---AGaa-GGCGGAGgu -5'
10714 3' -57.9 NC_002794.1 + 99698 0.66 0.870667
Target:  5'- -cGCGCUGGCGCcgcggaugUUCUUUCGCgaCCGg -3'
miRNA:   3'- cuCGUGGUCGCG--------AAGAAGGCGgaGGU- -5'
10714 3' -57.9 NC_002794.1 + 99812 0.72 0.54351
Target:  5'- cGGGCGCCGGCGCcgUCggCCGaCCUgCu -3'
miRNA:   3'- -CUCGUGGUCGCGa-AGaaGGC-GGAgGu -5'
10714 3' -57.9 NC_002794.1 + 100785 0.67 0.788874
Target:  5'- -cGCGCCuGCGgUUCgcggCCGCUUCUg -3'
miRNA:   3'- cuCGUGGuCGCgAAGaa--GGCGGAGGu -5'
10714 3' -57.9 NC_002794.1 + 105910 0.67 0.788874
Target:  5'- cGGCGgCGGCGCUaCcgCCGCCgCCGg -3'
miRNA:   3'- cUCGUgGUCGCGAaGaaGGCGGaGGU- -5'
10714 3' -57.9 NC_002794.1 + 106266 0.74 0.405466
Target:  5'- cGAGCGCC-GCGCgUCgcgCCGCCUCgGa -3'
miRNA:   3'- -CUCGUGGuCGCGaAGaa-GGCGGAGgU- -5'
10714 3' -57.9 NC_002794.1 + 112263 0.68 0.742371
Target:  5'- cGGgACCGGCGUcUCguccUCgGCCUCCGu -3'
miRNA:   3'- cUCgUGGUCGCGaAGa---AGgCGGAGGU- -5'
10714 3' -57.9 NC_002794.1 + 112591 0.71 0.593141
Target:  5'- -uGCGCCAGgGCccgUUCgaaCGCCUCCAc -3'
miRNA:   3'- cuCGUGGUCgCG---AAGaagGCGGAGGU- -5'
10714 3' -57.9 NC_002794.1 + 113115 0.75 0.372503
Target:  5'- -uGCACCuGGCGCUUC-UCCGUgUCCGa -3'
miRNA:   3'- cuCGUGG-UCGCGAAGaAGGCGgAGGU- -5'
10714 3' -57.9 NC_002794.1 + 113256 0.67 0.788874
Target:  5'- -cGCugCAGCGCg---UCCGCCcgcucggCCAg -3'
miRNA:   3'- cuCGugGUCGCGaagaAGGCGGa------GGU- -5'
10714 3' -57.9 NC_002794.1 + 114105 0.67 0.788874
Target:  5'- cGAGCucguUCAGCGCcgacagcucgUUCUUgCCGCCggCCAg -3'
miRNA:   3'- -CUCGu---GGUCGCG----------AAGAA-GGCGGa-GGU- -5'
10714 3' -57.9 NC_002794.1 + 115758 0.66 0.855768
Target:  5'- cGGCGCgauCGGCGCUcgaaggacUCgaUCGCCUCCGu -3'
miRNA:   3'- cUCGUG---GUCGCGA--------AGaaGGCGGAGGU- -5'
10714 3' -57.9 NC_002794.1 + 116146 0.66 0.840084
Target:  5'- cGGCgGCCAGgGCcugcaCCGCCUCCGu -3'
miRNA:   3'- cUCG-UGGUCgCGaagaaGGCGGAGGU- -5'
10714 3' -57.9 NC_002794.1 + 116889 0.71 0.603176
Target:  5'- gGGGCGCCGGCGCcgUCUccggCgGCCggUCCGg -3'
miRNA:   3'- -CUCGUGGUCGCGa-AGAa---GgCGG--AGGU- -5'
10714 3' -57.9 NC_002794.1 + 128845 0.67 0.815203
Target:  5'- uGAGCGCCGGCGUcgaCgacgCCGCUgccgCCGu -3'
miRNA:   3'- -CUCGUGGUCGCGaa-Gaa--GGCGGa---GGU- -5'
10714 3' -57.9 NC_002794.1 + 137085 0.67 0.797798
Target:  5'- -cGCGCCAugucgcccgcucGCGCUcCUUCCGCgacCUCCc -3'
miRNA:   3'- cuCGUGGU------------CGCGAaGAAGGCG---GAGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.