miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10714 3' -57.9 NC_002794.1 + 12611 0.69 0.693535
Target:  5'- -cGcCACCAGCGCgUCUggggCCGCUUCgAg -3'
miRNA:   3'- cuC-GUGGUCGCGaAGAa---GGCGGAGgU- -5'
10714 3' -57.9 NC_002794.1 + 19525 0.71 0.583134
Target:  5'- gGAGCGCCGGCGCggCgcggcCCGCCggugUCGg -3'
miRNA:   3'- -CUCGUGGUCGCGaaGaa---GGCGGa---GGU- -5'
10714 3' -57.9 NC_002794.1 + 30516 0.7 0.6233
Target:  5'- cAGCACCaAGCGCggCagcCCGCgCUCCAa -3'
miRNA:   3'- cUCGUGG-UCGCGaaGaa-GGCG-GAGGU- -5'
10714 3' -57.9 NC_002794.1 + 38498 0.72 0.504808
Target:  5'- -cGCGgCGGCGCcggUCgccgCCGCCUCCGc -3'
miRNA:   3'- cuCGUgGUCGCGa--AGaa--GGCGGAGGU- -5'
10714 3' -57.9 NC_002794.1 + 38564 0.71 0.603176
Target:  5'- aAGCccGCCGGCGCcucgacggagUCggCCGCCUCCu -3'
miRNA:   3'- cUCG--UGGUCGCGa---------AGaaGGCGGAGGu -5'
10714 3' -57.9 NC_002794.1 + 43002 0.66 0.855768
Target:  5'- aGGCACCGGUccgaguagcuccGCaggUCgUCgGCCUCCAu -3'
miRNA:   3'- cUCGUGGUCG------------CGa--AGaAGgCGGAGGU- -5'
10714 3' -57.9 NC_002794.1 + 46194 0.69 0.703436
Target:  5'- cGGCACC-GCGCUcgCUcgCCGCCguUCCGg -3'
miRNA:   3'- cUCGUGGuCGCGAa-GAa-GGCGG--AGGU- -5'
10714 3' -57.9 NC_002794.1 + 49271 0.66 0.848021
Target:  5'- cGGGCGCUccaacggcccgGGCGCcg---CCGCCUCCc -3'
miRNA:   3'- -CUCGUGG-----------UCGCGaagaaGGCGGAGGu -5'
10714 3' -57.9 NC_002794.1 + 49615 0.68 0.751893
Target:  5'- cGGGCGCCggcGGCGCcUCgcCCGCC-CCu -3'
miRNA:   3'- -CUCGUGG---UCGCGaAGaaGGCGGaGGu -5'
10714 3' -57.9 NC_002794.1 + 56517 0.66 0.870667
Target:  5'- cGGGCGcuCCGGCGCUcguUCcggUCGCCaUCCGg -3'
miRNA:   3'- -CUCGU--GGUCGCGA---AGaa-GGCGG-AGGU- -5'
10714 3' -57.9 NC_002794.1 + 58393 0.66 0.861074
Target:  5'- cGGGCGCCAGCuGCUggagcacgccaaggUgCggCCGCCgCCAg -3'
miRNA:   3'- -CUCGUGGUCG-CGA--------------A-GaaGGCGGaGGU- -5'
10714 3' -57.9 NC_002794.1 + 59920 0.68 0.732755
Target:  5'- uGGGCGCCcGCGUgcaggaccUCUUCCGCgUCUu -3'
miRNA:   3'- -CUCGUGGuCGCGa-------AGAAGGCGgAGGu -5'
10714 3' -57.9 NC_002794.1 + 60650 0.69 0.683584
Target:  5'- cGGCGCCggccacccGGCGCgcgccgCcgCCGCCUCCGu -3'
miRNA:   3'- cUCGUGG--------UCGCGaa----GaaGGCGGAGGU- -5'
10714 3' -57.9 NC_002794.1 + 60963 0.67 0.815203
Target:  5'- cGAGCGCCGG-GCcuacgCgCGCCUCCGg -3'
miRNA:   3'- -CUCGUGGUCgCGaagaaG-GCGGAGGU- -5'
10714 3' -57.9 NC_002794.1 + 62765 0.7 0.6233
Target:  5'- cGGCuCCGGCuGUUUCgccgcgcgCCGCCUCCGg -3'
miRNA:   3'- cUCGuGGUCG-CGAAGaa------GGCGGAGGU- -5'
10714 3' -57.9 NC_002794.1 + 63709 0.71 0.603176
Target:  5'- cGGCGCCGGCGCcgCcggaCCGCCgaUCCAa -3'
miRNA:   3'- cUCGUGGUCGCGaaGaa--GGCGG--AGGU- -5'
10714 3' -57.9 NC_002794.1 + 67418 0.66 0.855768
Target:  5'- cGGCGCCAGCGUcggcggcgugUCgcgCCGCUUCgGg -3'
miRNA:   3'- cUCGUGGUCGCGa---------AGaa-GGCGGAGgU- -5'
10714 3' -57.9 NC_002794.1 + 68951 0.75 0.349005
Target:  5'- cGGCGCCGGCGCcUCUcCCuCCUCCGc -3'
miRNA:   3'- cUCGUGGUCGCGaAGAaGGcGGAGGU- -5'
10714 3' -57.9 NC_002794.1 + 80537 0.71 0.563229
Target:  5'- uGGCACCGGCGCcUCUUCC-CCgcggacCCGu -3'
miRNA:   3'- cUCGUGGUCGCGaAGAAGGcGGa-----GGU- -5'
10714 3' -57.9 NC_002794.1 + 82878 0.66 0.870667
Target:  5'- -cGCgACCGuGCGCgccUCgcgUCCGCCUCg- -3'
miRNA:   3'- cuCG-UGGU-CGCGa--AGa--AGGCGGAGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.