miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10714 3' -57.9 NC_002794.1 + 181133 1.08 0.002488
Target:  5'- gGAGCACCAGCGCUUCUUCCGCCUCCAg -3'
miRNA:   3'- -CUCGUGGUCGCGAAGAAGGCGGAGGU- -5'
10714 3' -57.9 NC_002794.1 + 68951 0.75 0.349005
Target:  5'- cGGCGCCGGCGCcUCUcCCuCCUCCGc -3'
miRNA:   3'- cUCGUGGUCGCGaAGAaGGcGGAGGU- -5'
10714 3' -57.9 NC_002794.1 + 113115 0.75 0.372503
Target:  5'- -uGCACCuGGCGCUUC-UCCGUgUCCGa -3'
miRNA:   3'- cuCGUGG-UCGCGAAGaAGGCGgAGGU- -5'
10714 3' -57.9 NC_002794.1 + 106266 0.74 0.405466
Target:  5'- cGAGCGCC-GCGCgUCgcgCCGCCUCgGa -3'
miRNA:   3'- -CUCGUGGuCGCGaAGaa-GGCGGAGgU- -5'
10714 3' -57.9 NC_002794.1 + 148204 0.74 0.440206
Target:  5'- cGGCGCCGGCGCgcgCUcgaUCgGUCUCCGg -3'
miRNA:   3'- cUCGUGGUCGCGaa-GA---AGgCGGAGGU- -5'
10714 3' -57.9 NC_002794.1 + 38498 0.72 0.504808
Target:  5'- -cGCGgCGGCGCcggUCgccgCCGCCUCCGc -3'
miRNA:   3'- cuCGUgGUCGCGa--AGaa--GGCGGAGGU- -5'
10714 3' -57.9 NC_002794.1 + 84184 0.72 0.514378
Target:  5'- cGGC-CCGGCGC-UCggcCCGCCUCCc -3'
miRNA:   3'- cUCGuGGUCGCGaAGaa-GGCGGAGGu -5'
10714 3' -57.9 NC_002794.1 + 99812 0.72 0.54351
Target:  5'- cGGGCGCCGGCGCcgUCggCCGaCCUgCu -3'
miRNA:   3'- -CUCGUGGUCGCGa-AGaaGGC-GGAgGu -5'
10714 3' -57.9 NC_002794.1 + 80537 0.71 0.563229
Target:  5'- uGGCACCGGCGCcUCUUCC-CCgcggacCCGu -3'
miRNA:   3'- cUCGUGGUCGCGaAGAAGGcGGa-----GGU- -5'
10714 3' -57.9 NC_002794.1 + 19525 0.71 0.583134
Target:  5'- gGAGCGCCGGCGCggCgcggcCCGCCggugUCGg -3'
miRNA:   3'- -CUCGUGGUCGCGaaGaa---GGCGGa---GGU- -5'
10714 3' -57.9 NC_002794.1 + 112591 0.71 0.593141
Target:  5'- -uGCGCCAGgGCccgUUCgaaCGCCUCCAc -3'
miRNA:   3'- cuCGUGGUCgCG---AAGaagGCGGAGGU- -5'
10714 3' -57.9 NC_002794.1 + 116889 0.71 0.603176
Target:  5'- gGGGCGCCGGCGCcgUCUccggCgGCCggUCCGg -3'
miRNA:   3'- -CUCGUGGUCGCGa-AGAa---GgCGG--AGGU- -5'
10714 3' -57.9 NC_002794.1 + 38564 0.71 0.603176
Target:  5'- aAGCccGCCGGCGCcucgacggagUCggCCGCCUCCu -3'
miRNA:   3'- cUCG--UGGUCGCGa---------AGaaGGCGGAGGu -5'
10714 3' -57.9 NC_002794.1 + 63709 0.71 0.603176
Target:  5'- cGGCGCCGGCGCcgCcggaCCGCCgaUCCAa -3'
miRNA:   3'- cUCGUGGUCGCGaaGaa--GGCGG--AGGU- -5'
10714 3' -57.9 NC_002794.1 + 62765 0.7 0.6233
Target:  5'- cGGCuCCGGCuGUUUCgccgcgcgCCGCCUCCGg -3'
miRNA:   3'- cUCGuGGUCG-CGAAGaa------GGCGGAGGU- -5'
10714 3' -57.9 NC_002794.1 + 30516 0.7 0.6233
Target:  5'- cAGCACCaAGCGCggCagcCCGCgCUCCAa -3'
miRNA:   3'- cUCGUGG-UCGCGaaGaa-GGCG-GAGGU- -5'
10714 3' -57.9 NC_002794.1 + 144726 0.7 0.663566
Target:  5'- uGAGCugCAGC---UCUUCCGCCagcauuUCCAc -3'
miRNA:   3'- -CUCGugGUCGcgaAGAAGGCGG------AGGU- -5'
10714 3' -57.9 NC_002794.1 + 99272 0.69 0.673591
Target:  5'- gGGGCuCCGGCGCgcucccgggcUCUUCCGCgaCCGc -3'
miRNA:   3'- -CUCGuGGUCGCGa---------AGAAGGCGgaGGU- -5'
10714 3' -57.9 NC_002794.1 + 60650 0.69 0.683584
Target:  5'- cGGCGCCggccacccGGCGCgcgccgCcgCCGCCUCCGu -3'
miRNA:   3'- cUCGUGG--------UCGCGaa----GaaGGCGGAGGU- -5'
10714 3' -57.9 NC_002794.1 + 12611 0.69 0.693535
Target:  5'- -cGcCACCAGCGCgUCUggggCCGCUUCgAg -3'
miRNA:   3'- cuC-GUGGUCGCGaAGAa---GGCGGAGgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.