miRNA display CGI


Results 1 - 20 of 318 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10714 5' -60.7 NC_002794.1 + 181169 1.07 0.002412
Target:  5'- cCGCGCCGACGGCGAACGGCGGACACUc -3'
miRNA:   3'- -GCGCGGCUGCCGCUUGCCGCCUGUGA- -5'
10714 5' -60.7 NC_002794.1 + 55299 0.85 0.070372
Target:  5'- gGCGgCGGCGGCGucGCGGCGGGCGCg -3'
miRNA:   3'- gCGCgGCUGCCGCu-UGCCGCCUGUGa -5'
10714 5' -60.7 NC_002794.1 + 84285 0.84 0.083938
Target:  5'- aGCuGCCGACGGgGAGCGGCGG-CGCUu -3'
miRNA:   3'- gCG-CGGCUGCCgCUUGCCGCCuGUGA- -5'
10714 5' -60.7 NC_002794.1 + 71776 0.83 0.095119
Target:  5'- cCGCGCCGucgcGCGGCGAGucgcccccCGGCGGGCGCg -3'
miRNA:   3'- -GCGCGGC----UGCCGCUU--------GCCGCCUGUGa -5'
10714 5' -60.7 NC_002794.1 + 94006 0.83 0.097518
Target:  5'- gGCGCCGGCGGCGGGcCGGCGGGuucCGCc -3'
miRNA:   3'- gCGCGGCUGCCGCUU-GCCGCCU---GUGa -5'
10714 5' -60.7 NC_002794.1 + 184570 0.82 0.113156
Target:  5'- aCGCGCCGccGCGGCG-GCGGCGGcCACg -3'
miRNA:   3'- -GCGCGGC--UGCCGCuUGCCGCCuGUGa -5'
10714 5' -60.7 NC_002794.1 + 108312 0.81 0.134026
Target:  5'- uGCGCCGGCGGUGGgucuuggACGGCGG-CGCa -3'
miRNA:   3'- gCGCGGCUGCCGCU-------UGCCGCCuGUGa -5'
10714 5' -60.7 NC_002794.1 + 12213 0.81 0.134353
Target:  5'- aCGUGCCGGCGGCGu-CGGCGG-CGCc -3'
miRNA:   3'- -GCGCGGCUGCCGCuuGCCGCCuGUGa -5'
10714 5' -60.7 NC_002794.1 + 116942 0.81 0.141051
Target:  5'- gGCGuccCCGGCGGCGGcguCGGCGGGCGCa -3'
miRNA:   3'- gCGC---GGCUGCCGCUu--GCCGCCUGUGa -5'
10714 5' -60.7 NC_002794.1 + 142326 0.81 0.144513
Target:  5'- gGCGCaGGCGGCGGagGCGGCGGAgGCg -3'
miRNA:   3'- gCGCGgCUGCCGCU--UGCCGCCUgUGa -5'
10714 5' -60.7 NC_002794.1 + 37741 0.81 0.144513
Target:  5'- gCGcCGCCGGCGGCGGcGCGGCGG-CGCc -3'
miRNA:   3'- -GC-GCGGCUGCCGCU-UGCCGCCuGUGa -5'
10714 5' -60.7 NC_002794.1 + 61888 0.8 0.148053
Target:  5'- gGCGCCGcGCGGCGAgcGCGGCGaGCGCa -3'
miRNA:   3'- gCGCGGC-UGCCGCU--UGCCGCcUGUGa -5'
10714 5' -60.7 NC_002794.1 + 62073 0.8 0.148053
Target:  5'- gCGaCGCCGGCGGCGAcgACGGC-GACGCg -3'
miRNA:   3'- -GC-GCGGCUGCCGCU--UGCCGcCUGUGa -5'
10714 5' -60.7 NC_002794.1 + 112320 0.8 0.155371
Target:  5'- gGCGCCGACGGCGGGgagcgcgccggcCGGCGG-CGCc -3'
miRNA:   3'- gCGCGGCUGCCGCUU------------GCCGCCuGUGa -5'
10714 5' -60.7 NC_002794.1 + 107541 0.8 0.159151
Target:  5'- gGCGCCGGCGGCGAcgaccGCGGUGGGgGa- -3'
miRNA:   3'- gCGCGGCUGCCGCU-----UGCCGCCUgUga -5'
10714 5' -60.7 NC_002794.1 + 44348 0.8 0.166962
Target:  5'- gGCGCCGGCGagacCGAgagcGCGGCGGGCGCg -3'
miRNA:   3'- gCGCGGCUGCc---GCU----UGCCGCCUGUGa -5'
10714 5' -60.7 NC_002794.1 + 188252 0.79 0.170994
Target:  5'- gGCGgCGGCGGCGGuaGCGGCGGGC-Cg -3'
miRNA:   3'- gCGCgGCUGCCGCU--UGCCGCCUGuGa -5'
10714 5' -60.7 NC_002794.1 + 191871 0.79 0.179322
Target:  5'- --gGCCGGCGGCGGaggggGCGGCGGAgGCg -3'
miRNA:   3'- gcgCGGCUGCCGCU-----UGCCGCCUgUGa -5'
10714 5' -60.7 NC_002794.1 + 154362 0.79 0.188007
Target:  5'- cCGCGCgGuccaggccGCGGCG-GCGGCGGGCACg -3'
miRNA:   3'- -GCGCGgC--------UGCCGCuUGCCGCCUGUGa -5'
10714 5' -60.7 NC_002794.1 + 119432 0.78 0.19706
Target:  5'- uCGCagguCCGACGGCG-GCGGCGGugGCg -3'
miRNA:   3'- -GCGc---GGCUGCCGCuUGCCGCCugUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.