miRNA display CGI


Results 1 - 20 of 318 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10714 5' -60.7 NC_002794.1 + 36 0.66 0.800069
Target:  5'- gGcCGCCGcgggcucuCGGaCGAACGGCcGACGCc -3'
miRNA:   3'- gC-GCGGCu-------GCC-GCUUGCCGcCUGUGa -5'
10714 5' -60.7 NC_002794.1 + 269 0.71 0.483211
Target:  5'- gCGCGCgGACGcGaGGACGGCGGcccugGCGCg -3'
miRNA:   3'- -GCGCGgCUGC-CgCUUGCCGCC-----UGUGa -5'
10714 5' -60.7 NC_002794.1 + 553 0.66 0.808439
Target:  5'- uGC-CCGGCcucGGC--GCGGCGGugGCa -3'
miRNA:   3'- gCGcGGCUG---CCGcuUGCCGCCugUGa -5'
10714 5' -60.7 NC_002794.1 + 866 0.69 0.652932
Target:  5'- gCGCGCCcGCgaGGCGGuCGGCGuGCGCg -3'
miRNA:   3'- -GCGCGGcUG--CCGCUuGCCGCcUGUGa -5'
10714 5' -60.7 NC_002794.1 + 2477 0.67 0.72888
Target:  5'- aGCGCgCGAgGGCGAucCGGUGGcCGg- -3'
miRNA:   3'- gCGCG-GCUgCCGCUu-GCCGCCuGUga -5'
10714 5' -60.7 NC_002794.1 + 8109 0.67 0.765315
Target:  5'- aGCGCCacCGaGCGGGCGGCGG-C-CUc -3'
miRNA:   3'- gCGCGGcuGC-CGCUUGCCGCCuGuGA- -5'
10714 5' -60.7 NC_002794.1 + 8756 0.66 0.800069
Target:  5'- gGCGUgucgCGACGGCGugaaGACGGCGuGGgaGCUg -3'
miRNA:   3'- gCGCG----GCUGCCGC----UUGCCGC-CUg-UGA- -5'
10714 5' -60.7 NC_002794.1 + 10877 0.66 0.816666
Target:  5'- gCGUGaCCGACGaCGGGCGGgCGGAgguguuucgcCACg -3'
miRNA:   3'- -GCGC-GGCUGCcGCUUGCC-GCCU----------GUGa -5'
10714 5' -60.7 NC_002794.1 + 12177 0.69 0.652932
Target:  5'- uCGcCGCCGACGcCGccGCGGCcGGGCGCc -3'
miRNA:   3'- -GC-GCGGCUGCcGCu-UGCCG-CCUGUGa -5'
10714 5' -60.7 NC_002794.1 + 12213 0.81 0.134353
Target:  5'- aCGUGCCGGCGGCGu-CGGCGG-CGCc -3'
miRNA:   3'- -GCGCGGCUGCCGCuuGCCGCCuGUGa -5'
10714 5' -60.7 NC_002794.1 + 12394 0.66 0.782932
Target:  5'- uCGCcugGCCGACaaccgcacGCGGACGGCGcGCGCc -3'
miRNA:   3'- -GCG---CGGCUGc-------CGCUUGCCGCcUGUGa -5'
10714 5' -60.7 NC_002794.1 + 14056 0.78 0.221369
Target:  5'- -aCGCCGACGGCGAuccUGGCGGAgCGCc -3'
miRNA:   3'- gcGCGGCUGCCGCUu--GCCGCCU-GUGa -5'
10714 5' -60.7 NC_002794.1 + 14476 0.69 0.604742
Target:  5'- gCGCGCCGcgcucgcuguucGCGGCG-GCGGCccGCGCUc -3'
miRNA:   3'- -GCGCGGC------------UGCCGCuUGCCGccUGUGA- -5'
10714 5' -60.7 NC_002794.1 + 14590 0.74 0.37466
Target:  5'- gCGgGCCG-UGGCGAGCGcGCcGGGCACc -3'
miRNA:   3'- -GCgCGGCuGCCGCUUGC-CG-CCUGUGa -5'
10714 5' -60.7 NC_002794.1 + 14656 0.76 0.263756
Target:  5'- gGCGCCG-CGGCGucgguccgacucgcGGCGGCGGucGCGCUg -3'
miRNA:   3'- gCGCGGCuGCCGC--------------UUGCCGCC--UGUGA- -5'
10714 5' -60.7 NC_002794.1 + 16273 0.67 0.765315
Target:  5'- uCGCGCCGcgccccuguUGGCGGAgucuagccUGGCGGcCGCg -3'
miRNA:   3'- -GCGCGGCu--------GCCGCUU--------GCCGCCuGUGa -5'
10714 5' -60.7 NC_002794.1 + 17128 0.66 0.77418
Target:  5'- aCG-GUCGAagcCGGCGaAACGGCGGuaGCGCc -3'
miRNA:   3'- -GCgCGGCU---GCCGC-UUGCCGCC--UGUGa -5'
10714 5' -60.7 NC_002794.1 + 17626 0.66 0.808439
Target:  5'- -cCGCCG-CGGCGAGCGaucccgccgccGCGGcCGCc -3'
miRNA:   3'- gcGCGGCuGCCGCUUGC-----------CGCCuGUGa -5'
10714 5' -60.7 NC_002794.1 + 18250 0.67 0.72888
Target:  5'- gCGCgGCCGAcCGGCGAccGCGagauGCGcGGCGCc -3'
miRNA:   3'- -GCG-CGGCU-GCCGCU--UGC----CGC-CUGUGa -5'
10714 5' -60.7 NC_002794.1 + 19453 0.68 0.691257
Target:  5'- gCGgGCaCGAgCGGCGGcgGCGGCGGGaccCGCc -3'
miRNA:   3'- -GCgCG-GCU-GCCGCU--UGCCGCCU---GUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.