miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10716 3' -56.4 NC_002794.1 + 120139 0.69 0.809295
Target:  5'- cGGgGACGGgccgGUGCCGGacGAcGAGGAc -3'
miRNA:   3'- aCCgCUGCUa---CAUGGCCa-CUcCUCCU- -5'
10716 3' -56.4 NC_002794.1 + 51257 0.69 0.817794
Target:  5'- aGGCGugGggGcggGCCGG-GAGGcAGGc -3'
miRNA:   3'- aCCGCugCuaCa--UGGCCaCUCC-UCCu -5'
10716 3' -56.4 NC_002794.1 + 158152 0.68 0.839918
Target:  5'- cGGCGACGAggggaagGUccacggugagcggaACCgcgaugGGUGAGGGGGu -3'
miRNA:   3'- aCCGCUGCUa------CA--------------UGG------CCACUCCUCCu -5'
10716 3' -56.4 NC_002794.1 + 95839 0.68 0.842297
Target:  5'- cGGCGGCGGcg-GCCGGgGAGGcGGc -3'
miRNA:   3'- aCCGCUGCUacaUGGCCaCUCCuCCu -5'
10716 3' -56.4 NC_002794.1 + 112757 0.68 0.850111
Target:  5'- cGGCGGCGggGUcggGGUGAGGucucGGAg -3'
miRNA:   3'- aCCGCUGCuaCAuggCCACUCCu---CCU- -5'
10716 3' -56.4 NC_002794.1 + 109166 0.68 0.850111
Target:  5'- aUGGCGACGAgcggcgGUAgCGGcgGAGGcagcGGGu -3'
miRNA:   3'- -ACCGCUGCUa-----CAUgGCCa-CUCCu---CCU- -5'
10716 3' -56.4 NC_002794.1 + 108334 0.68 0.857737
Target:  5'- cGGCGGCGcaggaggagGUGgcggAgCGGggagcgGAGGAGGAc -3'
miRNA:   3'- aCCGCUGC---------UACa---UgGCCa-----CUCCUCCU- -5'
10716 3' -56.4 NC_002794.1 + 87004 0.68 0.857737
Target:  5'- cGGCGGCGuggGUuCCGGcGAGGguccgcAGGAu -3'
miRNA:   3'- aCCGCUGCua-CAuGGCCaCUCC------UCCU- -5'
10716 3' -56.4 NC_002794.1 + 50588 0.68 0.865168
Target:  5'- cGGCGGCugGGUG-GCCGGcGccGGGGGGAu -3'
miRNA:   3'- aCCGCUG--CUACaUGGCCaC--UCCUCCU- -5'
10716 3' -56.4 NC_002794.1 + 116018 0.68 0.8724
Target:  5'- cGGUGGCGAuUGgcgcggggACCGGaGAGGAGa- -3'
miRNA:   3'- aCCGCUGCU-ACa-------UGGCCaCUCCUCcu -5'
10716 3' -56.4 NC_002794.1 + 139633 0.68 0.8724
Target:  5'- gUGGCGAagcccaCGGUGcaGCUGGUGuaguacAGGAGGGa -3'
miRNA:   3'- -ACCGCU------GCUACa-UGGCCAC------UCCUCCU- -5'
10716 3' -56.4 NC_002794.1 + 5809 0.68 0.879427
Target:  5'- cGGUGA-GAcc--CCGGUGGGGGGGGg -3'
miRNA:   3'- aCCGCUgCUacauGGCCACUCCUCCU- -5'
10716 3' -56.4 NC_002794.1 + 18821 0.68 0.879427
Target:  5'- cGGCGACcucg-GCCGGcGcGGAGGAg -3'
miRNA:   3'- aCCGCUGcuacaUGGCCaCuCCUCCU- -5'
10716 3' -56.4 NC_002794.1 + 177900 0.67 0.886244
Target:  5'- cGcGCGGuCGGUuUAUCGGgGAGGAGGGu -3'
miRNA:   3'- aC-CGCU-GCUAcAUGGCCaCUCCUCCU- -5'
10716 3' -56.4 NC_002794.1 + 42964 0.67 0.892848
Target:  5'- cGGCGugGAUGUaggccaGCUGGUGcgccAGGAu -3'
miRNA:   3'- aCCGCugCUACA------UGGCCACucc-UCCU- -5'
10716 3' -56.4 NC_002794.1 + 107621 0.67 0.892848
Target:  5'- cGGgGACGGUGg--CGGUGAcgaaGAGGAg -3'
miRNA:   3'- aCCgCUGCUACaugGCCACUc---CUCCU- -5'
10716 3' -56.4 NC_002794.1 + 143225 0.67 0.904793
Target:  5'- gUGGCggaaccacaggaaGACGGUGUcguCgUGGUGcAGGAGGAa -3'
miRNA:   3'- -ACCG-------------CUGCUACAu--G-GCCAC-UCCUCCU- -5'
10716 3' -56.4 NC_002794.1 + 125690 0.67 0.910758
Target:  5'- gGGCGACG-UGUugCugcgcgugacGGUGgagcggagcgaacGGGAGGAg -3'
miRNA:   3'- aCCGCUGCuACAugG----------CCAC-------------UCCUCCU- -5'
10716 3' -56.4 NC_002794.1 + 44245 0.67 0.913656
Target:  5'- gGGCGGCucgGUGCCGGgcggcucggccgccGGGGAcGGAg -3'
miRNA:   3'- aCCGCUGcuaCAUGGCCa-------------CUCCU-CCU- -5'
10716 3' -56.4 NC_002794.1 + 44721 0.66 0.92255
Target:  5'- cGGCGACGucg-GCCGGcGccgccGGAGGGc -3'
miRNA:   3'- aCCGCUGCuacaUGGCCaCu----CCUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.