miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10716 3' -56.4 NC_002794.1 + 95890 0.66 0.942241
Target:  5'- cGGCGGCGAgGgcgcacgACgUGGUGcGGGAGGu -3'
miRNA:   3'- aCCGCUGCUaCa------UG-GCCAC-UCCUCCu -5'
10716 3' -56.4 NC_002794.1 + 100456 0.66 0.932849
Target:  5'- cGGCGGCGgcGccuucCCGGUGGcGGAGa- -3'
miRNA:   3'- aCCGCUGCuaCau---GGCCACU-CCUCcu -5'
10716 3' -56.4 NC_002794.1 + 101274 0.71 0.717242
Target:  5'- cGGCGcCGGUGgcggCGGcGGGGAGGAg -3'
miRNA:   3'- aCCGCuGCUACaug-GCCaCUCCUCCU- -5'
10716 3' -56.4 NC_002794.1 + 102188 0.66 0.937658
Target:  5'- cGGCGAgGAccUGgcgGCCGccGUGAcGGAGGc -3'
miRNA:   3'- aCCGCUgCU--ACa--UGGC--CACU-CCUCCu -5'
10716 3' -56.4 NC_002794.1 + 107546 0.75 0.482386
Target:  5'- cGGCGGCGAcg-ACCGcGgugGGGGAGGAg -3'
miRNA:   3'- aCCGCUGCUacaUGGC-Ca--CUCCUCCU- -5'
10716 3' -56.4 NC_002794.1 + 107621 0.67 0.892848
Target:  5'- cGGgGACGGUGg--CGGUGAcgaaGAGGAg -3'
miRNA:   3'- aCCgCUGCUACaugGCCACUc---CUCCU- -5'
10716 3' -56.4 NC_002794.1 + 108334 0.68 0.857737
Target:  5'- cGGCGGCGcaggaggagGUGgcggAgCGGggagcgGAGGAGGAc -3'
miRNA:   3'- aCCGCUGC---------UACa---UgGCCa-----CUCCUCCU- -5'
10716 3' -56.4 NC_002794.1 + 109111 0.7 0.768354
Target:  5'- cGGCGGuuucgGUGCCGGUguuuccgaacggaccGAGGAGGGg -3'
miRNA:   3'- aCCGCUgcua-CAUGGCCA---------------CUCCUCCU- -5'
10716 3' -56.4 NC_002794.1 + 109166 0.68 0.850111
Target:  5'- aUGGCGACGAgcggcgGUAgCGGcgGAGGcagcGGGu -3'
miRNA:   3'- -ACCGCUGCUa-----CAUgGCCa-CUCCu---CCU- -5'
10716 3' -56.4 NC_002794.1 + 112757 0.68 0.850111
Target:  5'- cGGCGGCGggGUcggGGUGAGGucucGGAg -3'
miRNA:   3'- aCCGCUGCuaCAuggCCACUCCu---CCU- -5'
10716 3' -56.4 NC_002794.1 + 114763 0.66 0.932849
Target:  5'- cGGCGcCGGUccucGgCGGcGAGGAGGAa -3'
miRNA:   3'- aCCGCuGCUAca--UgGCCaCUCCUCCU- -5'
10716 3' -56.4 NC_002794.1 + 115932 0.73 0.605264
Target:  5'- cGGCGGCGGgccggcccgccgcgUGUcGCCGGggaccgUGGGGGGGAg -3'
miRNA:   3'- aCCGCUGCU--------------ACA-UGGCC------ACUCCUCCU- -5'
10716 3' -56.4 NC_002794.1 + 116018 0.68 0.8724
Target:  5'- cGGUGGCGAuUGgcgcggggACCGGaGAGGAGa- -3'
miRNA:   3'- aCCGCUGCU-ACa-------UGGCCaCUCCUCcu -5'
10716 3' -56.4 NC_002794.1 + 120051 0.7 0.782913
Target:  5'- cGGCGGCGGUGgcgGCCGcG-GAGGccGAc -3'
miRNA:   3'- aCCGCUGCUACa--UGGC-CaCUCCucCU- -5'
10716 3' -56.4 NC_002794.1 + 120139 0.69 0.809295
Target:  5'- cGGgGACGGgccgGUGCCGGacGAcGAGGAc -3'
miRNA:   3'- aCCgCUGCUa---CAUGGCCa-CUcCUCCU- -5'
10716 3' -56.4 NC_002794.1 + 125690 0.67 0.910758
Target:  5'- gGGCGACG-UGUugCugcgcgugacGGUGgagcggagcgaacGGGAGGAg -3'
miRNA:   3'- aCCGCUGCuACAugG----------CCAC-------------UCCUCCU- -5'
10716 3' -56.4 NC_002794.1 + 126735 0.7 0.795382
Target:  5'- gUGGgGACGGUGggaCGGUGGuggugucgggaacguGGGGGAa -3'
miRNA:   3'- -ACCgCUGCUACaugGCCACU---------------CCUCCU- -5'
10716 3' -56.4 NC_002794.1 + 129080 0.7 0.745973
Target:  5'- cUGGCGGCGGaccGU-CCGGUG-GGuGGAc -3'
miRNA:   3'- -ACCGCUGCUa--CAuGGCCACuCCuCCU- -5'
10716 3' -56.4 NC_002794.1 + 139516 0.7 0.77385
Target:  5'- aUGGCGAUGA---ACCaGGUGAGcccGAGGAu -3'
miRNA:   3'- -ACCGCUGCUacaUGG-CCACUC---CUCCU- -5'
10716 3' -56.4 NC_002794.1 + 139633 0.68 0.8724
Target:  5'- gUGGCGAagcccaCGGUGcaGCUGGUGuaguacAGGAGGGa -3'
miRNA:   3'- -ACCGCU------GCUACa-UGGCCAC------UCCUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.