Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10717 | 5' | -52 | NC_002794.1 | + | 4170 | 0.7 | 0.952673 |
Target: 5'- aGGGGUCGUCGcgguGggUCGUCGAGGCa- -3' miRNA: 3'- gCCUCAGUAGU----CuuAGUGGCUCUGgc -5' |
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10717 | 5' | -52 | NC_002794.1 | + | 10328 | 0.66 | 0.995107 |
Target: 5'- uCGGccGUCGUCGG---CGCCGcGACCGg -3' miRNA: 3'- -GCCu-CAGUAGUCuuaGUGGCuCUGGC- -5' |
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10717 | 5' | -52 | NC_002794.1 | + | 14386 | 0.71 | 0.918822 |
Target: 5'- -cGAGUCAacgUCucccGAGUCACCGAGugCa -3' miRNA: 3'- gcCUCAGU---AGu---CUUAGUGGCUCugGc -5' |
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10717 | 5' | -52 | NC_002794.1 | + | 14743 | 0.68 | 0.975429 |
Target: 5'- cCGGcgcGUCAUCGGAgcccgaagccGUCgaggccGCUGAGGCCGg -3' miRNA: 3'- -GCCu--CAGUAGUCU----------UAG------UGGCUCUGGC- -5' |
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10717 | 5' | -52 | NC_002794.1 | + | 15155 | 0.7 | 0.956194 |
Target: 5'- gCGGAGUgaaaaaCcgCAGGAgggccguUCGCCGgAGACCGg -3' miRNA: 3'- -GCCUCA------GuaGUCUU-------AGUGGC-UCUGGC- -5' |
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10717 | 5' | -52 | NC_002794.1 | + | 35101 | 0.67 | 0.991434 |
Target: 5'- uGGA--CGUCAGcGUgACCGAGaACCGg -3' miRNA: 3'- gCCUcaGUAGUCuUAgUGGCUC-UGGC- -5' |
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10717 | 5' | -52 | NC_002794.1 | + | 41343 | 0.71 | 0.918822 |
Target: 5'- cCGGGGUCucCGGggUCACCGccgucGGCCu -3' miRNA: 3'- -GCCUCAGuaGUCuuAGUGGCu----CUGGc -5' |
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10717 | 5' | -52 | NC_002794.1 | + | 42465 | 0.67 | 0.991434 |
Target: 5'- uGGcGUCGUCcauGucgcgcgCGCCGGGGCCGa -3' miRNA: 3'- gCCuCAGUAGu--Cuua----GUGGCUCUGGC- -5' |
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10717 | 5' | -52 | NC_002794.1 | + | 42644 | 0.68 | 0.980551 |
Target: 5'- gCGGAGUCgcggccgaagccgacGgcgccgccggcaCGGggUaCGCCGAGACCGg -3' miRNA: 3'- -GCCUCAG---------------Ua-----------GUCuuA-GUGGCUCUGGC- -5' |
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10717 | 5' | -52 | NC_002794.1 | + | 59106 | 0.67 | 0.988919 |
Target: 5'- cCGcGAGcccuUCGUCGcGGcCACCGAGGCCGa -3' miRNA: 3'- -GC-CUC----AGUAGUcUUaGUGGCUCUGGC- -5' |
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10717 | 5' | -52 | NC_002794.1 | + | 86077 | 0.68 | 0.975429 |
Target: 5'- gCGGAucUCAUCGGAccgcCGCCGGGACgGa -3' miRNA: 3'- -GCCUc-AGUAGUCUua--GUGGCUCUGgC- -5' |
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10717 | 5' | -52 | NC_002794.1 | + | 86810 | 0.67 | 0.988919 |
Target: 5'- aGGGGagAUcCAGGGccgcgaccUCGCCGGGAUCGg -3' miRNA: 3'- gCCUCagUA-GUCUU--------AGUGGCUCUGGC- -5' |
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10717 | 5' | -52 | NC_002794.1 | + | 87021 | 0.74 | 0.808858 |
Target: 5'- gCGaGGGUCcgCAGGAUC-CgGGGACCGg -3' miRNA: 3'- -GC-CUCAGuaGUCUUAGuGgCUCUGGC- -5' |
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10717 | 5' | -52 | NC_002794.1 | + | 96919 | 0.66 | 0.99539 |
Target: 5'- gCGGAGgcgCcggcgacagcacgccGUCGGAGUCuCCGgAGACCu -3' miRNA: 3'- -GCCUCa--G---------------UAGUCUUAGuGGC-UCUGGc -5' |
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10717 | 5' | -52 | NC_002794.1 | + | 98227 | 0.67 | 0.985354 |
Target: 5'- cCGGgauuacgucaaccaGGcCAUCGGccacAUCGCCGAGGCCu -3' miRNA: 3'- -GCC--------------UCaGUAGUCu---UAGUGGCUCUGGc -5' |
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10717 | 5' | -52 | NC_002794.1 | + | 103832 | 0.67 | 0.987463 |
Target: 5'- uGGAGUCG-CAGGccuugacCACCGAGcggGCCGc -3' miRNA: 3'- gCCUCAGUaGUCUua-----GUGGCUC---UGGC- -5' |
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10717 | 5' | -52 | NC_002794.1 | + | 119503 | 0.74 | 0.826116 |
Target: 5'- uCGGGGUCGUCGGcggCGCgGAG-CCGg -3' miRNA: 3'- -GCCUCAGUAGUCuuaGUGgCUCuGGC- -5' |
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10717 | 5' | -52 | NC_002794.1 | + | 124465 | 0.67 | 0.99024 |
Target: 5'- ---cGUCGUCGGcGUCGCCGccgcacgcccGGACCGc -3' miRNA: 3'- gccuCAGUAGUCuUAGUGGC----------UCUGGC- -5' |
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10717 | 5' | -52 | NC_002794.1 | + | 127624 | 0.67 | 0.991434 |
Target: 5'- cCGGAcUCGUCGucGaCGCCGAcGACCGa -3' miRNA: 3'- -GCCUcAGUAGUcuUaGUGGCU-CUGGC- -5' |
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10717 | 5' | -52 | NC_002794.1 | + | 129788 | 0.66 | 0.994339 |
Target: 5'- aCGGcGUCGcCGGAAuUCGCUGucGGACCGc -3' miRNA: 3'- -GCCuCAGUaGUCUU-AGUGGC--UCUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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