Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1079 | 3' | -49.8 | NC_000929.1 | + | 17497 | 0.66 | 0.864231 |
Target: 5'- gGAACaGGcauuUGAACGGCaGGCAGACc -3' miRNA: 3'- -CUUGaCCau--GCUUGUUGaCCGUCUGc -5' |
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1079 | 3' | -49.8 | NC_000929.1 | + | 20316 | 0.67 | 0.855395 |
Target: 5'- aGGCUGGgggGCuGGACGuuCUGGguGugGg -3' miRNA: 3'- cUUGACCa--UG-CUUGUu-GACCguCugC- -5' |
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1079 | 3' | -49.8 | NC_000929.1 | + | 4869 | 0.67 | 0.845364 |
Target: 5'- gGAACUGG-ACGGugAugaggguacacuuGCUGGCAugguGGCGu -3' miRNA: 3'- -CUUGACCaUGCUugU-------------UGACCGU----CUGC- -5' |
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1079 | 3' | -49.8 | NC_000929.1 | + | 12130 | 0.67 | 0.836925 |
Target: 5'- cGAugUGGUucGCGGcCAgauugacugGCUGGCAGAg- -3' miRNA: 3'- -CUugACCA--UGCUuGU---------UGACCGUCUgc -5' |
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1079 | 3' | -49.8 | NC_000929.1 | + | 13281 | 0.67 | 0.835975 |
Target: 5'- cAGCUGGUuaaaggcGCGGGCAAacagGGCacAGGCGg -3' miRNA: 3'- cUUGACCA-------UGCUUGUUga--CCG--UCUGC- -5' |
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1079 | 3' | -49.8 | NC_000929.1 | + | 15685 | 0.68 | 0.786629 |
Target: 5'- -cACUGGUAUcaaauACAAUgcccGGCAGGCGg -3' miRNA: 3'- cuUGACCAUGcu---UGUUGa---CCGUCUGC- -5' |
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1079 | 3' | -49.8 | NC_000929.1 | + | 30136 | 0.69 | 0.75413 |
Target: 5'- cGAugUGGUgacagucaGCGGGCcGCUGGCGG-Cu -3' miRNA: 3'- -CUugACCA--------UGCUUGuUGACCGUCuGc -5' |
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1079 | 3' | -49.8 | NC_000929.1 | + | 25267 | 0.7 | 0.685652 |
Target: 5'- -cGCUGGaUGCGAAaccgcaAACgugGGCAGGCa -3' miRNA: 3'- cuUGACC-AUGCUUg-----UUGa--CCGUCUGc -5' |
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1079 | 3' | -49.8 | NC_000929.1 | + | 23419 | 0.72 | 0.556513 |
Target: 5'- --cCUGGaugcugGCGAAUGcCUGGCAGGCGg -3' miRNA: 3'- cuuGACCa-----UGCUUGUuGACCGUCUGC- -5' |
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1079 | 3' | -49.8 | NC_000929.1 | + | 21369 | 0.79 | 0.245732 |
Target: 5'- -cGCUGGaugauUACGAGCGucACUGGCAGACc -3' miRNA: 3'- cuUGACC-----AUGCUUGU--UGACCGUCUGc -5' |
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1079 | 3' | -49.8 | NC_000929.1 | + | 16151 | 1.09 | 0.002362 |
Target: 5'- gGAACUGGUACGAACAACUGGCAGACGc -3' miRNA: 3'- -CUUGACCAUGCUUGUUGACCGUCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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