miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1086 5' -50 NC_000929.1 + 17351 0.66 0.852595
Target:  5'- gGGGCAu-GUGGAGGUGAauaAGUgAGUc- -3'
miRNA:   3'- -CCCGUuuCGCCUUCAUU---UCGgUCAcg -5'
1086 5' -50 NC_000929.1 + 22690 0.66 0.852595
Target:  5'- cGGGCAAcgucAGCGucuGGAGUGGAcgcGCCGG-GUc -3'
miRNA:   3'- -CCCGUU----UCGC---CUUCAUUU---CGGUCaCG- -5'
1086 5' -50 NC_000929.1 + 3865 0.67 0.833937
Target:  5'- aGGGC---GCGGGAGagcGGCCcuuuacggcguGGUGCg -3'
miRNA:   3'- -CCCGuuuCGCCUUCauuUCGG-----------UCACG- -5'
1086 5' -50 NC_000929.1 + 22968 0.67 0.831052
Target:  5'- uGGCAAAGCGGGugccaucacuuGCCAGcuUGUa -3'
miRNA:   3'- cCCGUUUCGCCUucauuu-----CGGUC--ACG- -5'
1086 5' -50 NC_000929.1 + 29343 0.67 0.804146
Target:  5'- uGGCGAcagcGGCGGAAccacAGGGCCGaUGCa -3'
miRNA:   3'- cCCGUU----UCGCCUUca--UUUCGGUcACG- -5'
1086 5' -50 NC_000929.1 + 3607 0.67 0.804145
Target:  5'- -aGCGGGGCGGuucAGGUAGuucuGCCAcUGCa -3'
miRNA:   3'- ccCGUUUCGCC---UUCAUUu---CGGUcACG- -5'
1086 5' -50 NC_000929.1 + 25872 0.7 0.634615
Target:  5'- aGGcGCAAu-UGGcAGUAcAGCCGGUGCa -3'
miRNA:   3'- -CC-CGUUucGCCuUCAUuUCGGUCACG- -5'
1086 5' -50 NC_000929.1 + 25581 0.72 0.540934
Target:  5'- cGGUAcgccGGGUGGggGUAAuGCCAGUacaggGCg -3'
miRNA:   3'- cCCGU----UUCGCCuuCAUUuCGGUCA-----CG- -5'
1086 5' -50 NC_000929.1 + 4719 0.72 0.529491
Target:  5'- aGGUAAaaGGCGcGAAGguaAAAGCCAGcGCg -3'
miRNA:   3'- cCCGUU--UCGC-CUUCa--UUUCGGUCaCG- -5'
1086 5' -50 NC_000929.1 + 21790 1.17 0.000601
Target:  5'- cGGGCAAAGCGGAAGUAAAGCCAGUGCg -3'
miRNA:   3'- -CCCGUUUCGCCUUCAUUUCGGUCACG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.