Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
109 | 3' | -65.2 | AC_000006.1 | + | 33231 | 0.66 | 0.200183 |
Target: 5'- cGGccGUCCuUUCGCUGCUGCCGCUcagucaUCCa -3' miRNA: 3'- uCCu-CGGG-GAGCGGCGGCGGUGG------AGG- -5' |
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109 | 3' | -65.2 | AC_000006.1 | + | 7435 | 0.66 | 0.185191 |
Target: 5'- gAGGAGCUCaaaaaGCUGCCGCaCAUCaaaggCCg -3' miRNA: 3'- -UCCUCGGGgag--CGGCGGCG-GUGGa----GG- -5' |
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109 | 3' | -65.2 | AC_000006.1 | + | 16630 | 0.66 | 0.184709 |
Target: 5'- cGGGGCCgCUCGCuCGUucugcccaccgugCGCUACCaCCc -3' miRNA: 3'- uCCUCGGgGAGCG-GCG-------------GCGGUGGaGG- -5' |
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109 | 3' | -65.2 | AC_000006.1 | + | 6309 | 0.66 | 0.180418 |
Target: 5'- -cGAGCCCCUgCGCgGCgaggugGCCACCagCg -3' miRNA: 3'- ucCUCGGGGA-GCGgCGg-----CGGUGGagG- -5' |
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109 | 3' | -65.2 | AC_000006.1 | + | 30346 | 0.66 | 0.175755 |
Target: 5'- aAGGAGCUCCUCGauGCCaUCAacaUCCa -3' miRNA: 3'- -UCCUCGGGGAGCggCGGcGGUgg-AGG- -5' |
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109 | 3' | -65.2 | AC_000006.1 | + | 15208 | 0.67 | 0.171199 |
Target: 5'- cGGAcuGCCaCCgcCGCCGCCGUgcgCACCaCCg -3' miRNA: 3'- uCCU--CGG-GGa-GCGGCGGCG---GUGGaGG- -5' |
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109 | 3' | -65.2 | AC_000006.1 | + | 25486 | 0.67 | 0.171199 |
Target: 5'- --cAGCCCCagaugggccUgGCCGCgGgCGCCUCCc -3' miRNA: 3'- uccUCGGGG---------AgCGGCGgCgGUGGAGG- -5' |
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109 | 3' | -65.2 | AC_000006.1 | + | 10574 | 0.67 | 0.166749 |
Target: 5'- cGGGGugaccaaguCCCgCUCGCCGCgGCCGuCCgcgaaCCg -3' miRNA: 3'- uCCUC---------GGG-GAGCGGCGgCGGU-GGa----GG- -5' |
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109 | 3' | -65.2 | AC_000006.1 | + | 3762 | 0.67 | 0.166749 |
Target: 5'- uGGaAGCCCUgaGCCGCCagcugGCCGCC-CUg -3' miRNA: 3'- uCC-UCGGGGagCGGCGG-----CGGUGGaGG- -5' |
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109 | 3' | -65.2 | AC_000006.1 | + | 15472 | 0.67 | 0.158158 |
Target: 5'- -cGAGCCgCgCGCCgcGCCGCCACUgcaCCc -3' miRNA: 3'- ucCUCGGgGaGCGG--CGGCGGUGGa--GG- -5' |
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109 | 3' | -65.2 | AC_000006.1 | + | 17445 | 0.67 | 0.158158 |
Target: 5'- cAGGAucGUCuCCUCcgcaucugGCCGCgGCCGCUUCUc -3' miRNA: 3'- -UCCU--CGG-GGAG--------CGGCGgCGGUGGAGG- -5' |
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109 | 3' | -65.2 | AC_000006.1 | + | 16101 | 0.67 | 0.154015 |
Target: 5'- cAGGugcuGCCCCaggCGgUGCUGCUGCCgagCCg -3' miRNA: 3'- -UCCu---CGGGGa--GCgGCGGCGGUGGa--GG- -5' |
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109 | 3' | -65.2 | AC_000006.1 | + | 21115 | 0.67 | 0.14997 |
Target: 5'- gAGGAGCUCUaUCGCuuccuCGCgCGCCACUcCCc -3' miRNA: 3'- -UCCUCGGGG-AGCG-----GCG-GCGGUGGaGG- -5' |
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109 | 3' | -65.2 | AC_000006.1 | + | 15145 | 0.67 | 0.14997 |
Target: 5'- cAGcAGCaCCCcguccgCGuCCGCgGCCACUUCCg -3' miRNA: 3'- -UCcUCG-GGGa-----GC-GGCGgCGGUGGAGG- -5' |
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109 | 3' | -65.2 | AC_000006.1 | + | 10060 | 0.67 | 0.14997 |
Target: 5'- gAGGAccugGCCCCggGCgCGCCGgCCACC-Ca -3' miRNA: 3'- -UCCU----CGGGGagCG-GCGGC-GGUGGaGg -5' |
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109 | 3' | -65.2 | AC_000006.1 | + | 25687 | 0.67 | 0.14997 |
Target: 5'- -uGAGCUuugCCUgggcguugaggUGaCCGCCGCCugCUCCa -3' miRNA: 3'- ucCUCGG---GGA-----------GC-GGCGGCGGugGAGG- -5' |
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109 | 3' | -65.2 | AC_000006.1 | + | 4915 | 0.67 | 0.14997 |
Target: 5'- -aGAGCUCCUC-UCGCUGggcggggaCCGCCUCCu -3' miRNA: 3'- ucCUCGGGGAGcGGCGGC--------GGUGGAGG- -5' |
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109 | 3' | -65.2 | AC_000006.1 | + | 10024 | 0.67 | 0.146022 |
Target: 5'- --uGGCCgCUCuaccgccaGCCGCCGCCGCaCUUCc -3' miRNA: 3'- uccUCGGgGAG--------CGGCGGCGGUG-GAGG- -5' |
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109 | 3' | -65.2 | AC_000006.1 | + | 4181 | 0.68 | 0.138409 |
Target: 5'- aAGGGGCUCCcCGUgGCCacaGUCuCCUCCu -3' miRNA: 3'- -UCCUCGGGGaGCGgCGG---CGGuGGAGG- -5' |
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109 | 3' | -65.2 | AC_000006.1 | + | 13280 | 0.69 | 0.111475 |
Target: 5'- aGGGAGCCugcgCCcgCGCCGCggcgacagCGCCACgaCCg -3' miRNA: 3'- -UCCUCGG----GGa-GCGGCG--------GCGGUGgaGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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