miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
109 3' -65.2 AC_000006.1 + 33231 0.66 0.200183
Target:  5'- cGGccGUCCuUUCGCUGCUGCCGCUcagucaUCCa -3'
miRNA:   3'- uCCu-CGGG-GAGCGGCGGCGGUGG------AGG- -5'
109 3' -65.2 AC_000006.1 + 7435 0.66 0.185191
Target:  5'- gAGGAGCUCaaaaaGCUGCCGCaCAUCaaaggCCg -3'
miRNA:   3'- -UCCUCGGGgag--CGGCGGCG-GUGGa----GG- -5'
109 3' -65.2 AC_000006.1 + 16630 0.66 0.184709
Target:  5'- cGGGGCCgCUCGCuCGUucugcccaccgugCGCUACCaCCc -3'
miRNA:   3'- uCCUCGGgGAGCG-GCG-------------GCGGUGGaGG- -5'
109 3' -65.2 AC_000006.1 + 6309 0.66 0.180418
Target:  5'- -cGAGCCCCUgCGCgGCgaggugGCCACCagCg -3'
miRNA:   3'- ucCUCGGGGA-GCGgCGg-----CGGUGGagG- -5'
109 3' -65.2 AC_000006.1 + 30346 0.66 0.175755
Target:  5'- aAGGAGCUCCUCGauGCCaUCAacaUCCa -3'
miRNA:   3'- -UCCUCGGGGAGCggCGGcGGUgg-AGG- -5'
109 3' -65.2 AC_000006.1 + 15208 0.67 0.171199
Target:  5'- cGGAcuGCCaCCgcCGCCGCCGUgcgCACCaCCg -3'
miRNA:   3'- uCCU--CGG-GGa-GCGGCGGCG---GUGGaGG- -5'
109 3' -65.2 AC_000006.1 + 25486 0.67 0.171199
Target:  5'- --cAGCCCCagaugggccUgGCCGCgGgCGCCUCCc -3'
miRNA:   3'- uccUCGGGG---------AgCGGCGgCgGUGGAGG- -5'
109 3' -65.2 AC_000006.1 + 10574 0.67 0.166749
Target:  5'- cGGGGugaccaaguCCCgCUCGCCGCgGCCGuCCgcgaaCCg -3'
miRNA:   3'- uCCUC---------GGG-GAGCGGCGgCGGU-GGa----GG- -5'
109 3' -65.2 AC_000006.1 + 3762 0.67 0.166749
Target:  5'- uGGaAGCCCUgaGCCGCCagcugGCCGCC-CUg -3'
miRNA:   3'- uCC-UCGGGGagCGGCGG-----CGGUGGaGG- -5'
109 3' -65.2 AC_000006.1 + 15472 0.67 0.158158
Target:  5'- -cGAGCCgCgCGCCgcGCCGCCACUgcaCCc -3'
miRNA:   3'- ucCUCGGgGaGCGG--CGGCGGUGGa--GG- -5'
109 3' -65.2 AC_000006.1 + 17445 0.67 0.158158
Target:  5'- cAGGAucGUCuCCUCcgcaucugGCCGCgGCCGCUUCUc -3'
miRNA:   3'- -UCCU--CGG-GGAG--------CGGCGgCGGUGGAGG- -5'
109 3' -65.2 AC_000006.1 + 16101 0.67 0.154015
Target:  5'- cAGGugcuGCCCCaggCGgUGCUGCUGCCgagCCg -3'
miRNA:   3'- -UCCu---CGGGGa--GCgGCGGCGGUGGa--GG- -5'
109 3' -65.2 AC_000006.1 + 25687 0.67 0.14997
Target:  5'- -uGAGCUuugCCUgggcguugaggUGaCCGCCGCCugCUCCa -3'
miRNA:   3'- ucCUCGG---GGA-----------GC-GGCGGCGGugGAGG- -5'
109 3' -65.2 AC_000006.1 + 21115 0.67 0.14997
Target:  5'- gAGGAGCUCUaUCGCuuccuCGCgCGCCACUcCCc -3'
miRNA:   3'- -UCCUCGGGG-AGCG-----GCG-GCGGUGGaGG- -5'
109 3' -65.2 AC_000006.1 + 15145 0.67 0.14997
Target:  5'- cAGcAGCaCCCcguccgCGuCCGCgGCCACUUCCg -3'
miRNA:   3'- -UCcUCG-GGGa-----GC-GGCGgCGGUGGAGG- -5'
109 3' -65.2 AC_000006.1 + 4915 0.67 0.14997
Target:  5'- -aGAGCUCCUC-UCGCUGggcggggaCCGCCUCCu -3'
miRNA:   3'- ucCUCGGGGAGcGGCGGC--------GGUGGAGG- -5'
109 3' -65.2 AC_000006.1 + 10060 0.67 0.14997
Target:  5'- gAGGAccugGCCCCggGCgCGCCGgCCACC-Ca -3'
miRNA:   3'- -UCCU----CGGGGagCG-GCGGC-GGUGGaGg -5'
109 3' -65.2 AC_000006.1 + 10024 0.67 0.146022
Target:  5'- --uGGCCgCUCuaccgccaGCCGCCGCCGCaCUUCc -3'
miRNA:   3'- uccUCGGgGAG--------CGGCGGCGGUG-GAGG- -5'
109 3' -65.2 AC_000006.1 + 4181 0.68 0.138409
Target:  5'- aAGGGGCUCCcCGUgGCCacaGUCuCCUCCu -3'
miRNA:   3'- -UCCUCGGGGaGCGgCGG---CGGuGGAGG- -5'
109 3' -65.2 AC_000006.1 + 13280 0.69 0.111475
Target:  5'- aGGGAGCCugcgCCcgCGCCGCggcgacagCGCCACgaCCg -3'
miRNA:   3'- -UCCUCGG----GGa-GCGGCG--------GCGGUGgaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.