miRNA display CGI

Results 21 - 30 of 30 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
109	3'	-65.2	AC_000006.1	+	13280	0.69	0.111475
	Target:  5'- aGGGAGCCugcgCCcgCGCCGCggcgacagCGCCACgaCCg -3' miRNA:   3'- -UCCUCGG----GGa-GCGGCG--------GCGGUGgaGG- -5'
109	3'	-65.2	AC_000006.1	+	20945	0.69	0.105551
	Target:  5'- cAGGGGCCCgaCUCGCCGCCuGCgGaCUUUUc -3' miRNA:   3'- -UCCUCGGG--GAGCGGCGG-CGgU-GGAGG- -5'
109	3'	-65.2	AC_000006.1	+	13115	0.7	0.091253
	Target:  5'- aAGGGGCuccgacccaccgcgCCCUCGCuCGCgGgcgugcgcaCCGCCUCCu -3' miRNA:   3'- -UCCUCG--------------GGGAGCG-GCGgC---------GGUGGAGG- -5'
109	3'	-65.2	AC_000006.1	+	8900	0.72	0.067804
	Target:  5'- cAGGGGCaUCUCGCUgauGUCGCCgaugGCCUCCa -3' miRNA:   3'- -UCCUCGgGGAGCGG---CGGCGG----UGGAGG- -5'
109	3'	-65.2	AC_000006.1	+	16544	0.72	0.067804
	Target:  5'- cAGGcGCCCagccagcaaaCGCCGCCGCCGCaccgCCa -3' miRNA:   3'- -UCCuCGGGga--------GCGGCGGCGGUGga--GG- -5'
109	3'	-65.2	AC_000006.1	+	15524	0.72	0.064116
	Target:  5'- gAGcGGCCgC-CGCCGCCGCCGCggCCa -3' miRNA:   3'- -UCcUCGGgGaGCGGCGGCGGUGgaGG- -5'
109	3'	-65.2	AC_000006.1	+	9567	0.72	0.062346
	Target:  5'- uGGucCUCCUCGCCaccauCCGCCGCCUCa -3' miRNA:   3'- uCCucGGGGAGCGGc----GGCGGUGGAGg -5'
109	3'	-65.2	AC_000006.1	+	24373	0.72	0.060623
	Target:  5'- uAGcAGCCCCUCGCCGCU--CACgUCCu -3' miRNA:   3'- -UCcUCGGGGAGCGGCGGcgGUGgAGG- -5'
109	3'	-65.2	AC_000006.1	+	8389	0.73	0.054181
	Target:  5'- cGGGGCCggaaC-CGCCGCUGCCGCCgggagcgcgUCCg -3' miRNA:   3'- uCCUCGGg---GaGCGGCGGCGGUGG---------AGG- -5'
109	3'	-65.2	AC_000006.1	+	22680	1.1	0.000052
	Target:  5'- gAGGAGCCCCUCGCCGCCGCCACCUCCu -3' miRNA:   3'- -UCCUCGGGGAGCGGCGGCGGUGGAGG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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