miRNA display CGI

Results 21 - 30 of 30 are showing below:
Show page: 1 2

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
109	3'	-65.2	AC_000006.1	+	16630	0.66	0.184709
	Target:  5'- cGGGGCCgCUCGCuCGUucugcccaccgugCGCUACCaCCc -3' miRNA:   3'- uCCUCGGgGAGCG-GCG-------------GCGGUGGaGG- -5'
109	3'	-65.2	AC_000006.1	+	17445	0.67	0.158158
	Target:  5'- cAGGAucGUCuCCUCcgcaucugGCCGCgGCCGCUUCUc -3' miRNA:   3'- -UCCU--CGG-GGAG--------CGGCGgCGGUGGAGG- -5'
109	3'	-65.2	AC_000006.1	+	20945	0.69	0.105551
	Target:  5'- cAGGGGCCCgaCUCGCCGCCuGCgGaCUUUUc -3' miRNA:   3'- -UCCUCGGG--GAGCGGCGG-CGgU-GGAGG- -5'
109	3'	-65.2	AC_000006.1	+	21115	0.67	0.14997
	Target:  5'- gAGGAGCUCUaUCGCuuccuCGCgCGCCACUcCCc -3' miRNA:   3'- -UCCUCGGGG-AGCG-----GCG-GCGGUGGaGG- -5'
109	3'	-65.2	AC_000006.1	+	22680	1.1	0.000052
	Target:  5'- gAGGAGCCCCUCGCCGCCGCCACCUCCu -3' miRNA:   3'- -UCCUCGGGGAGCGGCGGCGGUGGAGG- -5'
109	3'	-65.2	AC_000006.1	+	24373	0.72	0.060623
	Target:  5'- uAGcAGCCCCUCGCCGCU--CACgUCCu -3' miRNA:   3'- -UCcUCGGGGAGCGGCGGcgGUGgAGG- -5'
109	3'	-65.2	AC_000006.1	+	25486	0.67	0.171199
	Target:  5'- --cAGCCCCagaugggccUgGCCGCgGgCGCCUCCc -3' miRNA:   3'- uccUCGGGG---------AgCGGCGgCgGUGGAGG- -5'
109	3'	-65.2	AC_000006.1	+	25687	0.67	0.14997
	Target:  5'- -uGAGCUuugCCUgggcguugaggUGaCCGCCGCCugCUCCa -3' miRNA:   3'- ucCUCGG---GGA-----------GC-GGCGGCGGugGAGG- -5'
109	3'	-65.2	AC_000006.1	+	30346	0.66	0.175755
	Target:  5'- aAGGAGCUCCUCGauGCCaUCAacaUCCa -3' miRNA:   3'- -UCCUCGGGGAGCggCGGcGGUgg-AGG- -5'
109	3'	-65.2	AC_000006.1	+	33231	0.66	0.200183
	Target:  5'- cGGccGUCCuUUCGCUGCUGCCGCUcagucaUCCa -3' miRNA:   3'- uCCu-CGGG-GAGCGGCGGCGGUGG------AGG- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home