miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1090 5' -58.7 NC_000929.1 + 22987 0.66 0.465143
Target:  5'- gUCACCaCGGCcugACCGGUGGCaaagcgGGUGCc -3'
miRNA:   3'- gGGUGG-GCCGca-UGGCCAUUG------CCGUG- -5'
1090 5' -58.7 NC_000929.1 + 16420 0.66 0.455228
Target:  5'- aCCCGuaCGGCGUAUgGGgcagGACGuuauGCGCa -3'
miRNA:   3'- -GGGUggGCCGCAUGgCCa---UUGC----CGUG- -5'
1090 5' -58.7 NC_000929.1 + 25659 0.66 0.445429
Target:  5'- --uGCCgGGCGUGCCGuUGGCGGg-- -3'
miRNA:   3'- gggUGGgCCGCAUGGCcAUUGCCgug -5'
1090 5' -58.7 NC_000929.1 + 27050 0.66 0.435749
Target:  5'- cCCCugUCuGCcUG-CGGUGGCGGCAUg -3'
miRNA:   3'- -GGGugGGcCGcAUgGCCAUUGCCGUG- -5'
1090 5' -58.7 NC_000929.1 + 30212 0.66 0.435749
Target:  5'- aCCGCaCUGGC-UGCCGGUGAa-GCAg -3'
miRNA:   3'- gGGUG-GGCCGcAUGGCCAUUgcCGUg -5'
1090 5' -58.7 NC_000929.1 + 17176 0.67 0.411162
Target:  5'- aCCACCaguugcuguauguugUGGCa-ACCcGUGACGGCACg -3'
miRNA:   3'- gGGUGG---------------GCCGcaUGGcCAUUGCCGUG- -5'
1090 5' -58.7 NC_000929.1 + 25976 0.67 0.398284
Target:  5'- aCCCAgcggUCCGGCaagGCUGccAACGGCACc -3'
miRNA:   3'- -GGGU----GGGCCGca-UGGCcaUUGCCGUG- -5'
1090 5' -58.7 NC_000929.1 + 26718 0.67 0.377698
Target:  5'- uCCCAgagaaCCGGUuacagcaacggccuGUGCCGGU-ACGGCuGCa -3'
miRNA:   3'- -GGGUg----GGCCG--------------CAUGGCCAuUGCCG-UG- -5'
1090 5' -58.7 NC_000929.1 + 5344 0.67 0.371576
Target:  5'- gCgUAUCUGGCGcgauUACCGGuUAAUGGCAa -3'
miRNA:   3'- -GgGUGGGCCGC----AUGGCC-AUUGCCGUg -5'
1090 5' -58.7 NC_000929.1 + 19756 0.68 0.321929
Target:  5'- -gCACCCGcCGUgcuGCCGGUuACGGCu- -3'
miRNA:   3'- ggGUGGGCcGCA---UGGCCAuUGCCGug -5'
1090 5' -58.7 NC_000929.1 + 27624 0.69 0.306519
Target:  5'- gCCAguUCCGGCuGUuuCCGGUGAacCGGUACa -3'
miRNA:   3'- gGGU--GGGCCG-CAu-GGCCAUU--GCCGUG- -5'
1090 5' -58.7 NC_000929.1 + 24650 0.69 0.299771
Target:  5'- gCCCGCCagcaaaucacagCGGCGgaugccaaccugcugACCGGUuACGGUAUc -3'
miRNA:   3'- -GGGUGG------------GCCGCa--------------UGGCCAuUGCCGUG- -5'
1090 5' -58.7 NC_000929.1 + 22118 0.69 0.284474
Target:  5'- gCCAgCCuGauuUACCGGUGACGGCAg -3'
miRNA:   3'- gGGUgGGcCgc-AUGGCCAUUGCCGUg -5'
1090 5' -58.7 NC_000929.1 + 29130 0.7 0.270485
Target:  5'- aUCACCCGGUucaagauuuGUcgGgCGGUAGCGGCGg -3'
miRNA:   3'- gGGUGGGCCG---------CA--UgGCCAUUGCCGUg -5'
1090 5' -58.7 NC_000929.1 + 9332 0.7 0.270485
Target:  5'- -gCGCCCcGCGacuaUACCGGUcauGAUGGCACc -3'
miRNA:   3'- ggGUGGGcCGC----AUGGCCA---UUGCCGUG- -5'
1090 5' -58.7 NC_000929.1 + 27258 0.72 0.187147
Target:  5'- cCCCG-CUGGCuGUGCCGGUuguggugGACGGgGCa -3'
miRNA:   3'- -GGGUgGGCCG-CAUGGCCA-------UUGCCgUG- -5'
1090 5' -58.7 NC_000929.1 + 24100 0.72 0.173086
Target:  5'- gCCugCUGGCaGUGCCGGaaaaAGCGGgACa -3'
miRNA:   3'- gGGugGGCCG-CAUGGCCa---UUGCCgUG- -5'
1090 5' -58.7 NC_000929.1 + 14091 0.73 0.165738
Target:  5'- cCCCGuuuuaCCGGCGcugcauuugaugccACCGGUAACGGCGg -3'
miRNA:   3'- -GGGUg----GGCCGCa-------------UGGCCAUUGCCGUg -5'
1090 5' -58.7 NC_000929.1 + 11604 0.75 0.114466
Target:  5'- aCCCGCCUGuauuGUGUGCCGGUuGCGGUc- -3'
miRNA:   3'- -GGGUGGGC----CGCAUGGCCAuUGCCGug -5'
1090 5' -58.7 NC_000929.1 + 25529 1.11 0.000207
Target:  5'- cCCCACCCGGCGUACCGGUAACGGCACg -3'
miRNA:   3'- -GGGUGGGCCGCAUGGCCAUUGCCGUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.