miRNA display CGI


Results 1 - 15 of 15 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1093 3' -53.3 NC_000929.1 + 27554 1.11 0.000796
Target:  5'- aCUGUACCGGUUCACCGGAAACAGCCGg -3'
miRNA:   3'- -GACAUGGCCAAGUGGCCUUUGUCGGC- -5'
1093 3' -53.3 NC_000929.1 + 19909 0.74 0.273201
Target:  5'- uUGUACCGGUcggGCUGGAAAaAGCCGc -3'
miRNA:   3'- gACAUGGCCAag-UGGCCUUUgUCGGC- -5'
1093 3' -53.3 NC_000929.1 + 13674 0.74 0.303235
Target:  5'- cCUGUACCGGaaugCGCCGaauaaaGAGAguGCCGa -3'
miRNA:   3'- -GACAUGGCCaa--GUGGC------CUUUguCGGC- -5'
1093 3' -53.3 NC_000929.1 + 25741 0.71 0.41783
Target:  5'- -gGUGCCGGggCGCUGGGcuggauggggaaAGguGCCGg -3'
miRNA:   3'- gaCAUGGCCaaGUGGCCU------------UUguCGGC- -5'
1093 3' -53.3 NC_000929.1 + 1987 0.68 0.600352
Target:  5'- -cGUGCCacGGcuUUCGCCGGAuuCAGCa- -3'
miRNA:   3'- gaCAUGG--CC--AAGUGGCCUuuGUCGgc -5'
1093 3' -53.3 NC_000929.1 + 22532 0.68 0.604907
Target:  5'- cCUGUauggggauuGCCGGUgCACCGGAAccgucauaucuguacGCcGCCa -3'
miRNA:   3'- -GACA---------UGGCCAaGUGGCCUU---------------UGuCGGc -5'
1093 3' -53.3 NC_000929.1 + 9096 0.67 0.646004
Target:  5'- gUGUACaaaGccaUUCGCCGGAugcGACGGCUGa -3'
miRNA:   3'- gACAUGg--Cc--AAGUGGCCU---UUGUCGGC- -5'
1093 3' -53.3 NC_000929.1 + 11617 0.67 0.65627
Target:  5'- gUGUGCCGGUUgcggucgugagCugCGGccugaugugcugaGAcaGCAGCCGa -3'
miRNA:   3'- gACAUGGCCAA-----------GugGCC-------------UU--UGUCGGC- -5'
1093 3' -53.3 NC_000929.1 + 24307 0.67 0.65741
Target:  5'- gCUGUcaGCCGGggCGCUGGguAUcGCUGg -3'
miRNA:   3'- -GACA--UGGCCaaGUGGCCuuUGuCGGC- -5'
1093 3' -53.3 NC_000929.1 + 26662 0.67 0.668791
Target:  5'- gCUGUAaCCGGUUCuCUGgGAGAUAcGCUGu -3'
miRNA:   3'- -GACAU-GGCCAAGuGGC-CUUUGU-CGGC- -5'
1093 3' -53.3 NC_000929.1 + 15495 0.66 0.69143
Target:  5'- -aGUGCaugaugaGGUUCGCCGGGAAau-CCGu -3'
miRNA:   3'- gaCAUGg------CCAAGUGGCCUUUgucGGC- -5'
1093 3' -53.3 NC_000929.1 + 13616 0.66 0.721584
Target:  5'- uCUGUuacgucacgaaucaGCCGuGgUCGCCGGAAGCggaaaaAGCCu -3'
miRNA:   3'- -GACA--------------UGGC-CaAGUGGCCUUUG------UCGGc -5'
1093 3' -53.3 NC_000929.1 + 10843 0.66 0.735869
Target:  5'- --aUGCCGGUgauuaCGCCGGAgcgcgugaccaGAUGGCCc -3'
miRNA:   3'- gacAUGGCCAa----GUGGCCU-----------UUGUCGGc -5'
1093 3' -53.3 NC_000929.1 + 18546 0.68 0.62316
Target:  5'- --aUGCCGGUggCACCGGGGucauuggucagcGCAGCa- -3'
miRNA:   3'- gacAUGGCCAa-GUGGCCUU------------UGUCGgc -5'
1093 3' -53.3 NC_000929.1 + 21216 0.66 0.724896
Target:  5'- ---gGCCGGUUUACCGGuuccccguuCAGCa- -3'
miRNA:   3'- gacaUGGCCAAGUGGCCuuu------GUCGgc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.