miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1095 3' -50.9 NC_000929.1 + 21809 0.66 0.860353
Target:  5'- uGACGGG-GAGCcgGuguUCCGCUGacGGCa -3'
miRNA:   3'- gCUGCCUaUUCGuaU---AGGUGGCa-CCG- -5'
1095 3' -50.9 NC_000929.1 + 31088 0.67 0.813875
Target:  5'- gGACGGGaAacgcucccgcAGCAUuugccgcgcaucAUCCGCCGcagUGGCa -3'
miRNA:   3'- gCUGCCUaU----------UCGUA------------UAGGUGGC---ACCG- -5'
1095 3' -50.9 NC_000929.1 + 14437 0.67 0.777052
Target:  5'- uCGACGaGGacAGCAUacaggcgcugccaccAcgCCACCGUGGUg -3'
miRNA:   3'- -GCUGC-CUauUCGUA---------------Ua-GGUGGCACCG- -5'
1095 3' -50.9 NC_000929.1 + 14366 0.68 0.762115
Target:  5'- cCGACGacauGGCGacUuuGCCGUGGCg -3'
miRNA:   3'- -GCUGCcuauUCGUauAggUGGCACCG- -5'
1095 3' -50.9 NC_000929.1 + 22206 0.68 0.751266
Target:  5'- -uACGGGU--GCAuUAUCUGCCGUGGa -3'
miRNA:   3'- gcUGCCUAuuCGU-AUAGGUGGCACCg -5'
1095 3' -50.9 NC_000929.1 + 11647 0.69 0.706656
Target:  5'- aGGCGGGU---CAUAcgCCGCCG-GGCg -3'
miRNA:   3'- gCUGCCUAuucGUAUa-GGUGGCaCCG- -5'
1095 3' -50.9 NC_000929.1 + 17092 0.69 0.68381
Target:  5'- aGACGGGcuGGCAUAUUC-CCgGUGcGCu -3'
miRNA:   3'- gCUGCCUauUCGUAUAGGuGG-CAC-CG- -5'
1095 3' -50.9 NC_000929.1 + 8786 0.7 0.637561
Target:  5'- --cUGGcAUGGGCAUAgCCGCCGUcauGGCa -3'
miRNA:   3'- gcuGCC-UAUUCGUAUaGGUGGCA---CCG- -5'
1095 3' -50.9 NC_000929.1 + 15857 0.7 0.602772
Target:  5'- uCGAcCGGAUGGGC--GUCuCACCGgaagacUGGCa -3'
miRNA:   3'- -GCU-GCCUAUUCGuaUAG-GUGGC------ACCG- -5'
1095 3' -50.9 NC_000929.1 + 20586 0.71 0.590063
Target:  5'- -aGCGGAcGGGCAg--CCggaugauGCCGUGGCa -3'
miRNA:   3'- gcUGCCUaUUCGUauaGG-------UGGCACCG- -5'
1095 3' -50.9 NC_000929.1 + 20615 0.71 0.55796
Target:  5'- gGGCGGGUGAGaAUAUCCAgCCGcguacguguauagcgGGCg -3'
miRNA:   3'- gCUGCCUAUUCgUAUAGGU-GGCa--------------CCG- -5'
1095 3' -50.9 NC_000929.1 + 18510 0.72 0.500936
Target:  5'- aGGCGGAUuuGCAgcaCCGCaccgGUGGCg -3'
miRNA:   3'- gCUGCCUAuuCGUauaGGUGg---CACCG- -5'
1095 3' -50.9 NC_000929.1 + 8556 0.73 0.44766
Target:  5'- aCGGCGGAcaGGGCGUuUCCACacuggCGUGGUg -3'
miRNA:   3'- -GCUGCCUa-UUCGUAuAGGUG-----GCACCG- -5'
1095 3' -50.9 NC_000929.1 + 29676 0.76 0.325563
Target:  5'- uGGCGcGUuccAGCGUAUCCGgCGUGGCu -3'
miRNA:   3'- gCUGCcUAu--UCGUAUAGGUgGCACCG- -5'
1095 3' -50.9 NC_000929.1 + 29320 1.13 0.000921
Target:  5'- uCGACGGAUAAGCAUAUCCACCGUGGCg -3'
miRNA:   3'- -GCUGCCUAUUCGUAUAGGUGGCACCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.