Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
1096 | 5' | -54.8 | NC_000929.1 | + | 26716 | 0.66 | 0.636755 |
Target: 5'- gAUgGCAcugCGGCGGCaACCGCCGUg-- -3' miRNA: 3'- -UGgUGUa--GCCGUCGcUGGUGGUAagg -5' |
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1096 | 5' | -54.8 | NC_000929.1 | + | 27069 | 0.67 | 0.580092 |
Target: 5'- aACUACGUCaugcuGGCAGCGGCgCAgaCAUaCCg -3' miRNA: 3'- -UGGUGUAG-----CCGUCGCUG-GUg-GUAaGG- -5' |
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1096 | 5' | -54.8 | NC_000929.1 | + | 15051 | 0.67 | 0.567738 |
Target: 5'- cGCCGgAUCGcgaugauGCAGCG-CCACCGgcacgcgcauuUUCCc -3' miRNA: 3'- -UGGUgUAGC-------CGUCGCuGGUGGU-----------AAGG- -5' |
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1096 | 5' | -54.8 | NC_000929.1 | + | 14741 | 0.67 | 0.562145 |
Target: 5'- cACCGCGuUCGGCAucacgcagcaucugcGCGGCC-CgGUUCg -3' miRNA: 3'- -UGGUGU-AGCCGU---------------CGCUGGuGgUAAGg -5' |
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1096 | 5' | -54.8 | NC_000929.1 | + | 14517 | 0.68 | 0.524558 |
Target: 5'- cACCACGguggcguggUGGCAGCG-CCugUAUgcugUCCu -3' miRNA: 3'- -UGGUGUa--------GCCGUCGCuGGugGUA----AGG- -5' |
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1096 | 5' | -54.8 | NC_000929.1 | + | 10990 | 0.68 | 0.513681 |
Target: 5'- uACUAC--UGGCAGCcguguuuACCGCCGUUCUg -3' miRNA: 3'- -UGGUGuaGCCGUCGc------UGGUGGUAAGG- -5' |
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1096 | 5' | -54.8 | NC_000929.1 | + | 6308 | 0.68 | 0.49115 |
Target: 5'- uGCCugAUuuaacuguaauucCGGCAacgccuGCGACCGCUuucgGUUCCa -3' miRNA: 3'- -UGGugUA-------------GCCGU------CGCUGGUGG----UAAGG- -5' |
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1096 | 5' | -54.8 | NC_000929.1 | + | 35456 | 0.68 | 0.471167 |
Target: 5'- gGCCGUAUUGGUgGGCGACCACCuaaacuaaCCa -3' miRNA: 3'- -UGGUGUAGCCG-UCGCUGGUGGuaa-----GG- -5' |
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1096 | 5' | -54.8 | NC_000929.1 | + | 31881 | 0.68 | 0.471167 |
Target: 5'- cACCGCuuuugCGGUGGCuGCCAgCGUUUCa -3' miRNA: 3'- -UGGUGua---GCCGUCGcUGGUgGUAAGG- -5' |
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1096 | 5' | -54.8 | NC_000929.1 | + | 18520 | 0.69 | 0.450588 |
Target: 5'- gACCGCAcUGGCGGCaGACCuucCCGacaUCCu -3' miRNA: 3'- -UGGUGUaGCCGUCG-CUGGu--GGUa--AGG- -5' |
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1096 | 5' | -54.8 | NC_000929.1 | + | 8429 | 0.69 | 0.449572 |
Target: 5'- aGCCGCGUucuuucaUGGCAcCGAgCACCuGUUCCa -3' miRNA: 3'- -UGGUGUA-------GCCGUcGCUgGUGG-UAAGG- -5' |
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1096 | 5' | -54.8 | NC_000929.1 | + | 14117 | 0.69 | 0.427546 |
Target: 5'- uGCCACcgguaacggcgguuAUCuGGCAGaGGCCGCCcgUCUg -3' miRNA: 3'- -UGGUG--------------UAG-CCGUCgCUGGUGGuaAGG- -5' |
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1096 | 5' | -54.8 | NC_000929.1 | + | 17138 | 0.69 | 0.420673 |
Target: 5'- gGCgGCAUCaGCAGUGGUCGCCAgacuuUUCCc -3' miRNA: 3'- -UGgUGUAGcCGUCGCUGGUGGU-----AAGG- -5' |
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1096 | 5' | -54.8 | NC_000929.1 | + | 14866 | 0.72 | 0.283211 |
Target: 5'- cAUCACGUgcCGG-AGCGAUgCGCCAUUCCa -3' miRNA: 3'- -UGGUGUA--GCCgUCGCUG-GUGGUAAGG- -5' |
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1096 | 5' | -54.8 | NC_000929.1 | + | 30091 | 1.11 | 0.000447 |
Target: 5'- cACCACAUCGGCAGCGACCACCAUUCCu -3' miRNA: 3'- -UGGUGUAGCCGUCGCUGGUGGUAAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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