Results 1 - 19 of 19 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1097 | 5' | -47.2 | NC_000929.1 | + | 31752 | 0.69 | 0.831824 |
Target: 5'- ---uGCCCCGGCAGUuuuAAUUucgCUGg -3' miRNA: 3'- uuuuCGGGGCUGUCGu--UUAAua-GACg -5' |
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1097 | 5' | -47.2 | NC_000929.1 | + | 30975 | 0.8 | 0.294733 |
Target: 5'- -cAAGCCCUGACGGCAguAAUUgcagaaaggccGUCUGCc -3' miRNA: 3'- uuUUCGGGGCUGUCGU--UUAA-----------UAGACG- -5' |
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1097 | 5' | -47.2 | NC_000929.1 | + | 30947 | 1.12 | 0.002294 |
Target: 5'- uAAAAGCCCCGACAGCAAAUUAUCUGCg -3' miRNA: 3'- -UUUUCGGGGCUGUCGUUUAAUAGACG- -5' |
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1097 | 5' | -47.2 | NC_000929.1 | + | 30403 | 0.71 | 0.744906 |
Target: 5'- --cAGCCgUGACAGCAGcuccgCUGCa -3' miRNA: 3'- uuuUCGGgGCUGUCGUUuaauaGACG- -5' |
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1097 | 5' | -47.2 | NC_000929.1 | + | 30118 | 0.66 | 0.935912 |
Target: 5'- -cGGGCCgCUGGCGGCugucgccUGUUUGCg -3' miRNA: 3'- uuUUCGG-GGCUGUCGuuua---AUAGACG- -5' |
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1097 | 5' | -47.2 | NC_000929.1 | + | 29265 | 0.73 | 0.60005 |
Target: 5'- uAAAAGCCaguuCGACAGCAAuAUUA-CUGCc -3' miRNA: 3'- -UUUUCGGg---GCUGUCGUU-UAAUaGACG- -5' |
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1097 | 5' | -47.2 | NC_000929.1 | + | 27814 | 0.7 | 0.789989 |
Target: 5'- aAGAAGUucacgcuggaaaUCgGGgGGCAGAUUGUCUGCa -3' miRNA: 3'- -UUUUCG------------GGgCUgUCGUUUAAUAGACG- -5' |
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1097 | 5' | -47.2 | NC_000929.1 | + | 25521 | 0.7 | 0.800789 |
Target: 5'- --uGGCCCgGACAGCAAuaacggCUGg -3' miRNA: 3'- uuuUCGGGgCUGUCGUUuaaua-GACg -5' |
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1097 | 5' | -47.2 | NC_000929.1 | + | 25182 | 0.67 | 0.916799 |
Target: 5'- uAAAGCCCUGAgAGCAGGcUGg--GCc -3' miRNA: 3'- uUUUCGGGGCUgUCGUUUaAUagaCG- -5' |
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1097 | 5' | -47.2 | NC_000929.1 | + | 22187 | 0.66 | 0.951482 |
Target: 5'- --uGGUUCUGAguGCAAaauuuacgggugcAUUAUCUGCc -3' miRNA: 3'- uuuUCGGGGCUguCGUU-------------UAAUAGACG- -5' |
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1097 | 5' | -47.2 | NC_000929.1 | + | 21546 | 0.66 | 0.946951 |
Target: 5'- gAAAAGCCCCGuaACAGUu-----UCUGg -3' miRNA: 3'- -UUUUCGGGGC--UGUCGuuuaauAGACg -5' |
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1097 | 5' | -47.2 | NC_000929.1 | + | 20365 | 0.66 | 0.941601 |
Target: 5'- --cAGCCCCccagccuCAGCGAGcguuUCUGCu -3' miRNA: 3'- uuuUCGGGGcu-----GUCGUUUaau-AGACG- -5' |
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1097 | 5' | -47.2 | NC_000929.1 | + | 20261 | 0.71 | 0.733244 |
Target: 5'- ---cGUgCCGACAGCGugcUGUCUGUg -3' miRNA: 3'- uuuuCGgGGCUGUCGUuuaAUAGACG- -5' |
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1097 | 5' | -47.2 | NC_000929.1 | + | 18381 | 0.66 | 0.941047 |
Target: 5'- --cGGCCCagcagcgcaucgaUGACGGCGAAUUugguuaucucUCUGCg -3' miRNA: 3'- uuuUCGGG-------------GCUGUCGUUUAAu---------AGACG- -5' |
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1097 | 5' | -47.2 | NC_000929.1 | + | 14847 | 0.67 | 0.909746 |
Target: 5'- aAAAAGaCgCCGACAuGCuGAAUgaaUAUCUGCa -3' miRNA: 3'- -UUUUC-GgGGCUGU-CG-UUUA---AUAGACG- -5' |
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1097 | 5' | -47.2 | NC_000929.1 | + | 9672 | 0.78 | 0.347099 |
Target: 5'- -cAGGCaCCCGGCAGCucAUUAUCaGCg -3' miRNA: 3'- uuUUCG-GGGCUGUCGuuUAAUAGaCG- -5' |
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1097 | 5' | -47.2 | NC_000929.1 | + | 5819 | 0.67 | 0.923512 |
Target: 5'- cAAGAGUgCCG-CAGCGGcUUAUgUGCc -3' miRNA: 3'- -UUUUCGgGGCuGUCGUUuAAUAgACG- -5' |
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1097 | 5' | -47.2 | NC_000929.1 | + | 5323 | 0.68 | 0.894631 |
Target: 5'- uGAAGCCCgUGAaauguGGCAGcgUAUCUGg -3' miRNA: 3'- uUUUCGGG-GCUg----UCGUUuaAUAGACg -5' |
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1097 | 5' | -47.2 | NC_000929.1 | + | 1869 | 0.73 | 0.624491 |
Target: 5'- cGAGGaugCCUGGCAguuucugauuGCAGAUUAUCUGCg -3' miRNA: 3'- uUUUCg--GGGCUGU----------CGUUUAAUAGACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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