Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11176 | 5' | -50.9 | NC_002816.1 | + | 37788 | 1.15 | 0.003467 |
Target: 5'- uGGUGACACACGAAAUUGGCCACGCGCu -3' miRNA: 3'- -CCACUGUGUGCUUUAACCGGUGCGCG- -5' |
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11176 | 5' | -50.9 | NC_002816.1 | + | 30510 | 0.74 | 0.731147 |
Target: 5'- cGUGACACACGGAacGUUGaCgGCGuCGCa -3' miRNA: 3'- cCACUGUGUGCUU--UAACcGgUGC-GCG- -5' |
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11176 | 5' | -50.9 | NC_002816.1 | + | 29508 | 0.73 | 0.799856 |
Target: 5'- --cGAUugGaugUGGAcgUGGCCACGCGUa -3' miRNA: 3'- ccaCUGugU---GCUUuaACCGGUGCGCG- -5' |
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11176 | 5' | -50.9 | NC_002816.1 | + | 48011 | 0.73 | 0.809094 |
Target: 5'- uGGUGguGCACACGAuggaggacGAUugUGGCCGgGgGCg -3' miRNA: 3'- -CCAC--UGUGUGCU--------UUA--ACCGGUgCgCG- -5' |
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11176 | 5' | -50.9 | NC_002816.1 | + | 122422 | 0.73 | 0.818159 |
Target: 5'- aGGUGAUguuCGCucuGGUgGGCCugGCGCa -3' miRNA: 3'- -CCACUGu--GUGcu-UUAaCCGGugCGCG- -5' |
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11176 | 5' | -50.9 | NC_002816.1 | + | 74478 | 0.72 | 0.827041 |
Target: 5'- uGGUGAgAUACGAGAguaacaaaaUGGUgUACGCGCu -3' miRNA: 3'- -CCACUgUGUGCUUUa--------ACCG-GUGCGCG- -5' |
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11176 | 5' | -50.9 | NC_002816.1 | + | 109324 | 0.72 | 0.827041 |
Target: 5'- aGUGAgCAUACu--GUUGGCCAuacCGCGCa -3' miRNA: 3'- cCACU-GUGUGcuuUAACCGGU---GCGCG- -5' |
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11176 | 5' | -50.9 | NC_002816.1 | + | 86454 | 0.72 | 0.827041 |
Target: 5'- aGGUGGCugGCGGccaGAUUGaGUC-UGCGCu -3' miRNA: 3'- -CCACUGugUGCU---UUAAC-CGGuGCGCG- -5' |
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11176 | 5' | -50.9 | NC_002816.1 | + | 119002 | 0.71 | 0.897413 |
Target: 5'- aGGUGAUugA-GAGugUGGgCACGUGCa -3' miRNA: 3'- -CCACUGugUgCUUuaACCgGUGCGCG- -5' |
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11176 | 5' | -50.9 | NC_002816.1 | + | 49152 | 0.71 | 0.897413 |
Target: 5'- aGGUGA-GCGCcAAGUUGGCCAgguuCGcCGCg -3' miRNA: 3'- -CCACUgUGUGcUUUAACCGGU----GC-GCG- -5' |
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11176 | 5' | -50.9 | NC_002816.1 | + | 107661 | 0.7 | 0.916564 |
Target: 5'- uGGUGGCGCugaGGAaucAUUGGCgGgaGCGCg -3' miRNA: 3'- -CCACUGUGug-CUU---UAACCGgUg-CGCG- -5' |
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11176 | 5' | -50.9 | NC_002816.1 | + | 102905 | 0.7 | 0.916564 |
Target: 5'- uGGUGGCACAaau-GUUGaGUCACGUGg -3' miRNA: 3'- -CCACUGUGUgcuuUAAC-CGGUGCGCg -5' |
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11176 | 5' | -50.9 | NC_002816.1 | + | 12104 | 0.7 | 0.922435 |
Target: 5'- uGGUGuACAUagACGAAucUGGCUuuGCGCc -3' miRNA: 3'- -CCAC-UGUG--UGCUUuaACCGGugCGCG- -5' |
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11176 | 5' | -50.9 | NC_002816.1 | + | 122854 | 0.69 | 0.9334 |
Target: 5'- uGUGGCGgAgGAAAgugUGGCCcaccUGCGCa -3' miRNA: 3'- cCACUGUgUgCUUUa--ACCGGu---GCGCG- -5' |
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11176 | 5' | -50.9 | NC_002816.1 | + | 72205 | 0.68 | 0.956328 |
Target: 5'- cGGUGACAU-CGGGAcacUUGGCaaacUGCGCc -3' miRNA: 3'- -CCACUGUGuGCUUU---AACCGgu--GCGCG- -5' |
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11176 | 5' | -50.9 | NC_002816.1 | + | 119250 | 0.68 | 0.960165 |
Target: 5'- uGGgggGACACAUGAcguGAUUGGCgGgCG-GCg -3' miRNA: 3'- -CCa--CUGUGUGCU---UUAACCGgU-GCgCG- -5' |
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11176 | 5' | -50.9 | NC_002816.1 | + | 67498 | 0.68 | 0.963764 |
Target: 5'- aGGcgGACACAaaguAGUUGGCCACcuuuucCGCa -3' miRNA: 3'- -CCa-CUGUGUgcu-UUAACCGGUGc-----GCG- -5' |
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11176 | 5' | -50.9 | NC_002816.1 | + | 4905 | 0.68 | 0.970267 |
Target: 5'- uGGUGACGa--GGAAgaGGagGCGCGCg -3' miRNA: 3'- -CCACUGUgugCUUUaaCCggUGCGCG- -5' |
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11176 | 5' | -50.9 | NC_002816.1 | + | 67728 | 0.67 | 0.973184 |
Target: 5'- uGGUGACAaguuUGAGuuGUUGGUgGCGCa- -3' miRNA: 3'- -CCACUGUgu--GCUU--UAACCGgUGCGcg -5' |
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11176 | 5' | -50.9 | NC_002816.1 | + | 46536 | 0.67 | 0.975889 |
Target: 5'- uGGUGugcucauuaauAUACACGG---UGGCCACGUa- -3' miRNA: 3'- -CCAC-----------UGUGUGCUuuaACCGGUGCGcg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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