Results 21 - 35 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11176 | 5' | -50.9 | NC_002816.1 | + | 79113 | 0.66 | 0.989559 |
Target: 5'- aGGUG-CGCGuCGAuccguuGUUGGCCACcaccuUGCa -3' miRNA: 3'- -CCACuGUGU-GCUu-----UAACCGGUGc----GCG- -5' |
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11176 | 5' | -50.9 | NC_002816.1 | + | 80749 | 0.66 | 0.992045 |
Target: 5'- uGGUGuCGCucaucgauuCGGAcgUGGCgcccauaaaACGCGCa -3' miRNA: 3'- -CCACuGUGu--------GCUUuaACCGg--------UGCGCG- -5' |
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11176 | 5' | -50.9 | NC_002816.1 | + | 86291 | 0.67 | 0.98069 |
Target: 5'- cGGUGuCGgACuGAAAacguUUGGCCACGUucacggGCa -3' miRNA: 3'- -CCACuGUgUG-CUUU----AACCGGUGCG------CG- -5' |
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11176 | 5' | -50.9 | NC_002816.1 | + | 86454 | 0.72 | 0.827041 |
Target: 5'- aGGUGGCugGCGGccaGAUUGaGUC-UGCGCu -3' miRNA: 3'- -CCACUGugUGCU---UUAAC-CGGuGCGCG- -5' |
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11176 | 5' | -50.9 | NC_002816.1 | + | 96363 | 0.66 | 0.988107 |
Target: 5'- uGUGACACACcAAAuUUGGUgGCGUa- -3' miRNA: 3'- cCACUGUGUGcUUU-AACCGgUGCGcg -5' |
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11176 | 5' | -50.9 | NC_002816.1 | + | 102330 | 0.67 | 0.975889 |
Target: 5'- cGUGugAUugGuuggUGaGCgACGCGCa -3' miRNA: 3'- cCACugUGugCuuuaAC-CGgUGCGCG- -5' |
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11176 | 5' | -50.9 | NC_002816.1 | + | 102905 | 0.7 | 0.916564 |
Target: 5'- uGGUGGCACAaau-GUUGaGUCACGUGg -3' miRNA: 3'- -CCACUGUGUgcuuUAAC-CGGUGCGCg -5' |
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11176 | 5' | -50.9 | NC_002816.1 | + | 107661 | 0.7 | 0.916564 |
Target: 5'- uGGUGGCGCugaGGAaucAUUGGCgGgaGCGCg -3' miRNA: 3'- -CCACUGUGug-CUU---UAACCGgUg-CGCG- -5' |
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11176 | 5' | -50.9 | NC_002816.1 | + | 109324 | 0.72 | 0.827041 |
Target: 5'- aGUGAgCAUACu--GUUGGCCAuacCGCGCa -3' miRNA: 3'- cCACU-GUGUGcuuUAACCGGU---GCGCG- -5' |
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11176 | 5' | -50.9 | NC_002816.1 | + | 109949 | 0.66 | 0.990868 |
Target: 5'- -aUGACGC-UGAAugUGGCCGCGUu- -3' miRNA: 3'- ccACUGUGuGCUUuaACCGGUGCGcg -5' |
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11176 | 5' | -50.9 | NC_002816.1 | + | 119002 | 0.71 | 0.897413 |
Target: 5'- aGGUGAUugA-GAGugUGGgCACGUGCa -3' miRNA: 3'- -CCACUGugUgCUUuaACCgGUGCGCG- -5' |
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11176 | 5' | -50.9 | NC_002816.1 | + | 119250 | 0.68 | 0.960165 |
Target: 5'- uGGgggGACACAUGAcguGAUUGGCgGgCG-GCg -3' miRNA: 3'- -CCa--CUGUGUGCU---UUAACCGgU-GCgCG- -5' |
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11176 | 5' | -50.9 | NC_002816.1 | + | 121669 | 0.66 | 0.986503 |
Target: 5'- aGGuUGGCGCACGAAuggaagaaAUUGGagaGgGUGCa -3' miRNA: 3'- -CC-ACUGUGUGCUU--------UAACCgg-UgCGCG- -5' |
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11176 | 5' | -50.9 | NC_002816.1 | + | 122422 | 0.73 | 0.818159 |
Target: 5'- aGGUGAUguuCGCucuGGUgGGCCugGCGCa -3' miRNA: 3'- -CCACUGu--GUGcu-UUAaCCGGugCGCG- -5' |
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11176 | 5' | -50.9 | NC_002816.1 | + | 122854 | 0.69 | 0.9334 |
Target: 5'- uGUGGCGgAgGAAAgugUGGCCcaccUGCGCa -3' miRNA: 3'- cCACUGUgUgCUUUa--ACCGGu---GCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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