Results 21 - 35 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11176 | 5' | -50.9 | NC_002816.1 | + | 48011 | 0.73 | 0.809094 |
Target: 5'- uGGUGguGCACACGAuggaggacGAUugUGGCCGgGgGCg -3' miRNA: 3'- -CCAC--UGUGUGCU--------UUA--ACCGGUgCgCG- -5' |
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11176 | 5' | -50.9 | NC_002816.1 | + | 29508 | 0.73 | 0.799856 |
Target: 5'- --cGAUugGaugUGGAcgUGGCCACGCGUa -3' miRNA: 3'- ccaCUGugU---GCUUuaACCGGUGCGCG- -5' |
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11176 | 5' | -50.9 | NC_002816.1 | + | 30510 | 0.74 | 0.731147 |
Target: 5'- cGUGACACACGGAacGUUGaCgGCGuCGCa -3' miRNA: 3'- cCACUGUGUGCUU--UAACcGgUGC-GCG- -5' |
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11176 | 5' | -50.9 | NC_002816.1 | + | 67498 | 0.68 | 0.963764 |
Target: 5'- aGGcgGACACAaaguAGUUGGCCACcuuuucCGCa -3' miRNA: 3'- -CCa-CUGUGUgcu-UUAACCGGUGc-----GCG- -5' |
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11176 | 5' | -50.9 | NC_002816.1 | + | 4905 | 0.68 | 0.970267 |
Target: 5'- uGGUGACGa--GGAAgaGGagGCGCGCg -3' miRNA: 3'- -CCACUGUgugCUUUaaCCggUGCGCG- -5' |
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11176 | 5' | -50.9 | NC_002816.1 | + | 109949 | 0.66 | 0.990868 |
Target: 5'- -aUGACGC-UGAAugUGGCCGCGUu- -3' miRNA: 3'- ccACUGUGuGCUUuaACCGGUGCGcg -5' |
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11176 | 5' | -50.9 | NC_002816.1 | + | 3860 | 0.66 | 0.990868 |
Target: 5'- cGGUGGCACACccucgcGGCgAUGUGg -3' miRNA: 3'- -CCACUGUGUGcuuuaaCCGgUGCGCg -5' |
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11176 | 5' | -50.9 | NC_002816.1 | + | 79113 | 0.66 | 0.989559 |
Target: 5'- aGGUG-CGCGuCGAuccguuGUUGGCCACcaccuUGCa -3' miRNA: 3'- -CCACuGUGU-GCUu-----UAACCGGUGc----GCG- -5' |
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11176 | 5' | -50.9 | NC_002816.1 | + | 57322 | 0.66 | 0.988705 |
Target: 5'- uGGUGAUACGCGuguacggagacaguAggUGGaCCAC-CGCc -3' miRNA: 3'- -CCACUGUGUGCu-------------UuaACC-GGUGcGCG- -5' |
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11176 | 5' | -50.9 | NC_002816.1 | + | 121669 | 0.66 | 0.986503 |
Target: 5'- aGGuUGGCGCACGAAuggaagaaAUUGGagaGgGUGCa -3' miRNA: 3'- -CC-ACUGUGUGCUU--------UAACCgg-UgCGCG- -5' |
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11176 | 5' | -50.9 | NC_002816.1 | + | 27661 | 0.67 | 0.982804 |
Target: 5'- uGGUGAUAauaGAAGUggUGGCCAgG-GCa -3' miRNA: 3'- -CCACUGUgugCUUUA--ACCGGUgCgCG- -5' |
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11176 | 5' | -50.9 | NC_002816.1 | + | 86291 | 0.67 | 0.98069 |
Target: 5'- cGGUGuCGgACuGAAAacguUUGGCCACGUucacggGCa -3' miRNA: 3'- -CCACuGUgUG-CUUU----AACCGGUGCG------CG- -5' |
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11176 | 5' | -50.9 | NC_002816.1 | + | 102330 | 0.67 | 0.975889 |
Target: 5'- cGUGugAUugGuuggUGaGCgACGCGCa -3' miRNA: 3'- cCACugUGugCuuuaAC-CGgUGCGCG- -5' |
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11176 | 5' | -50.9 | NC_002816.1 | + | 17306 | 0.67 | 0.975889 |
Target: 5'- cGGUaucauACAUAgGGGAUUGGUgGCGCuGCa -3' miRNA: 3'- -CCAc----UGUGUgCUUUAACCGgUGCG-CG- -5' |
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11176 | 5' | -50.9 | NC_002816.1 | + | 37788 | 1.15 | 0.003467 |
Target: 5'- uGGUGACACACGAAAUUGGCCACGCGCu -3' miRNA: 3'- -CCACUGUGUGCUUUAACCGGUGCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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