miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11181 5' -50.5 NC_002816.1 + 28733 0.66 0.987103
Target:  5'- uACCUCCAAUAaACCCA-CCGAc--- -3'
miRNA:   3'- uUGGAGGUUGUgUGGGUaGGUUaugu -5'
11181 5' -50.5 NC_002816.1 + 59755 0.66 0.985347
Target:  5'- cAACCUgcacaCCGAUACACCaAUCUAcgACAa -3'
miRNA:   3'- -UUGGA-----GGUUGUGUGGgUAGGUuaUGU- -5'
11181 5' -50.5 NC_002816.1 + 60613 0.66 0.983414
Target:  5'- cACCUCCGucCGC-CCCAcccUCCAccucGUACAc -3'
miRNA:   3'- uUGGAGGUu-GUGuGGGU---AGGU----UAUGU- -5'
11181 5' -50.5 NC_002816.1 + 85128 0.66 0.981295
Target:  5'- cACCguaaUCAACACACCCA-CCAAUc-- -3'
miRNA:   3'- uUGGa---GGUUGUGUGGGUaGGUUAugu -5'
11181 5' -50.5 NC_002816.1 + 15177 0.66 0.978979
Target:  5'- cAGCCUUCAACAC-CCUAUaCCAGa--- -3'
miRNA:   3'- -UUGGAGGUUGUGuGGGUA-GGUUaugu -5'
11181 5' -50.5 NC_002816.1 + 32350 0.67 0.976193
Target:  5'- -uUCUCCAACgucauugGCGCCUuuGUCCAAUAUc -3'
miRNA:   3'- uuGGAGGUUG-------UGUGGG--UAGGUUAUGu -5'
11181 5' -50.5 NC_002816.1 + 60890 0.67 0.970758
Target:  5'- cACCUCCAACaACACCUGcCCucUGCc -3'
miRNA:   3'- uUGGAGGUUG-UGUGGGUaGGuuAUGu -5'
11181 5' -50.5 NC_002816.1 + 13791 0.67 0.970758
Target:  5'- cACCUUCAAUACACUgGUCaCAAUuuuGCGa -3'
miRNA:   3'- uUGGAGGUUGUGUGGgUAG-GUUA---UGU- -5'
11181 5' -50.5 NC_002816.1 + 75765 0.67 0.967566
Target:  5'- gAGCCcaCCGACgACGCCCaAUCCAccaaAUGCGa -3'
miRNA:   3'- -UUGGa-GGUUG-UGUGGG-UAGGU----UAUGU- -5'
11181 5' -50.5 NC_002816.1 + 93481 0.67 0.967566
Target:  5'- cACCUUgAACACAUUUAUCCuguUGCAu -3'
miRNA:   3'- uUGGAGgUUGUGUGGGUAGGuu-AUGU- -5'
11181 5' -50.5 NC_002816.1 + 106240 0.67 0.967566
Target:  5'- cAGCUUCCAACACauauuguucGCCCAucucUCCAGUuugucggccACAa -3'
miRNA:   3'- -UUGGAGGUUGUG---------UGGGU----AGGUUA---------UGU- -5'
11181 5' -50.5 NC_002816.1 + 7294 0.68 0.960455
Target:  5'- uGCCgUCCGuACACACCCcacUCCAcaaaGUACGc -3'
miRNA:   3'- uUGG-AGGU-UGUGUGGGu--AGGU----UAUGU- -5'
11181 5' -50.5 NC_002816.1 + 97602 0.68 0.956524
Target:  5'- cGCUUCCAACACGCUCAUU--GUugAu -3'
miRNA:   3'- uUGGAGGUUGUGUGGGUAGguUAugU- -5'
11181 5' -50.5 NC_002816.1 + 108600 0.68 0.947883
Target:  5'- -cCCUCCuaauguACACACCCAUaUCAGUGa- -3'
miRNA:   3'- uuGGAGGu-----UGUGUGGGUA-GGUUAUgu -5'
11181 5' -50.5 NC_002816.1 + 64908 0.68 0.947883
Target:  5'- cAAUUUCuCGACGCGCCCGcCCGcgACAu -3'
miRNA:   3'- -UUGGAG-GUUGUGUGGGUaGGUuaUGU- -5'
11181 5' -50.5 NC_002816.1 + 65981 0.68 0.947423
Target:  5'- cGCCUCCGACAUguaagucGCCCuacaCCgAAUACAc -3'
miRNA:   3'- uUGGAGGUUGUG-------UGGGua--GG-UUAUGU- -5'
11181 5' -50.5 NC_002816.1 + 118119 0.68 0.943164
Target:  5'- -cCCUCCAACACaaauuGCUCcgCCAGUAg- -3'
miRNA:   3'- uuGGAGGUUGUG-----UGGGuaGGUUAUgu -5'
11181 5' -50.5 NC_002816.1 + 54740 0.68 0.943164
Target:  5'- cACacaUUCGACACACaCCGcCCAAUACAu -3'
miRNA:   3'- uUGg--AGGUUGUGUG-GGUaGGUUAUGU- -5'
11181 5' -50.5 NC_002816.1 + 31412 0.69 0.932916
Target:  5'- cAGCauaCAACACACCCAccUCCAacauGUACAc -3'
miRNA:   3'- -UUGgagGUUGUGUGGGU--AGGU----UAUGU- -5'
11181 5' -50.5 NC_002816.1 + 112934 0.69 0.927381
Target:  5'- cACCUCCAACACcaacacuacuaACaCCA-CCGAUACc -3'
miRNA:   3'- uUGGAGGUUGUG-----------UG-GGUaGGUUAUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.