Results 21 - 24 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11181 | 5' | -50.5 | NC_002816.1 | + | 106240 | 0.67 | 0.967566 |
Target: 5'- cAGCUUCCAACACauauuguucGCCCAucucUCCAGUuugucggccACAa -3' miRNA: 3'- -UUGGAGGUUGUG---------UGGGU----AGGUUA---------UGU- -5' |
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11181 | 5' | -50.5 | NC_002816.1 | + | 108600 | 0.68 | 0.947883 |
Target: 5'- -cCCUCCuaauguACACACCCAUaUCAGUGa- -3' miRNA: 3'- uuGGAGGu-----UGUGUGGGUA-GGUUAUgu -5' |
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11181 | 5' | -50.5 | NC_002816.1 | + | 112934 | 0.69 | 0.927381 |
Target: 5'- cACCUCCAACACcaacacuacuaACaCCA-CCGAUACc -3' miRNA: 3'- uUGGAGGUUGUG-----------UG-GGUaGGUUAUGu -5' |
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11181 | 5' | -50.5 | NC_002816.1 | + | 118119 | 0.68 | 0.943164 |
Target: 5'- -cCCUCCAACACaaauuGCUCcgCCAGUAg- -3' miRNA: 3'- uuGGAGGUUGUG-----UGGGuaGGUUAUgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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