miRNA display CGI


Results 41 - 60 of 103 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11182 5' -45.4 NC_002816.1 + 48712 0.7 0.997315
Target:  5'- ----cAACACCcAUGCCGGCGaucAUGGUg -3'
miRNA:   3'- gaaaaUUGUGGuUGCGGUUGU---UGCCG- -5'
11182 5' -45.4 NC_002816.1 + 48865 0.82 0.671819
Target:  5'- aCUg--AACACCAugauCGCCGGCAugGGUg -3'
miRNA:   3'- -GAaaaUUGUGGUu---GCGGUUGUugCCG- -5'
11182 5' -45.4 NC_002816.1 + 49156 0.66 0.999981
Target:  5'- ----gAGCGCCAAguugGCCAgguucGCcGCGGCu -3'
miRNA:   3'- gaaaaUUGUGGUUg---CGGU-----UGuUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 49217 0.71 0.992803
Target:  5'- --gUUGACACCGugGUUAugAA-GGCg -3'
miRNA:   3'- gaaAAUUGUGGUugCGGUugUUgCCG- -5'
11182 5' -45.4 NC_002816.1 + 50206 0.73 0.981485
Target:  5'- ---aUGugGCCAACGaCGACGAccCGGCg -3'
miRNA:   3'- gaaaAUugUGGUUGCgGUUGUU--GCCG- -5'
11182 5' -45.4 NC_002816.1 + 50376 0.69 0.998474
Target:  5'- ----gGACcCCGcucuCGCCGcucGCGACGGCa -3'
miRNA:   3'- gaaaaUUGuGGUu---GCGGU---UGUUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 54910 1.14 0.013956
Target:  5'- uCUUUUAACACCAACGCCAACAACGGCu -3'
miRNA:   3'- -GAAAAUUGUGGUUGCGGUUGUUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 55408 0.67 0.999863
Target:  5'- aCUUUgugcACACCAuUGUuuugcuggaaauaauCAACGGCGGCa -3'
miRNA:   3'- -GAAAau--UGUGGUuGCG---------------GUUGUUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 56699 0.69 0.999178
Target:  5'- ---aUAACGCCuccuccaacuACGCCAcCAgaaauuGCGGCa -3'
miRNA:   3'- gaaaAUUGUGGu---------UGCGGUuGU------UGCCG- -5'
11182 5' -45.4 NC_002816.1 + 58128 0.75 0.937393
Target:  5'- ---aUGugACCAAUGauCCGAUAACGGCu -3'
miRNA:   3'- gaaaAUugUGGUUGC--GGUUGUUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 59421 0.69 0.999178
Target:  5'- ----cGACACCAACaaCCAGCAAUGcGUc -3'
miRNA:   3'- gaaaaUUGUGGUUGc-GGUUGUUGC-CG- -5'
11182 5' -45.4 NC_002816.1 + 61828 0.71 0.995504
Target:  5'- ----cGACACCAuCGagagaCAGCAcaGCGGCa -3'
miRNA:   3'- gaaaaUUGUGGUuGCg----GUUGU--UGCCG- -5'
11182 5' -45.4 NC_002816.1 + 63067 0.7 0.998147
Target:  5'- -------uGCCGACGCCGAUuguaGGCg -3'
miRNA:   3'- gaaaauugUGGUUGCGGUUGuug-CCG- -5'
11182 5' -45.4 NC_002816.1 + 65186 0.68 0.999671
Target:  5'- ---aUAACAUCAACaCCAACAACa-- -3'
miRNA:   3'- gaaaAUUGUGGUUGcGGUUGUUGccg -5'
11182 5' -45.4 NC_002816.1 + 66768 0.69 0.999246
Target:  5'- --gUUGGCGCCAaaaACGCgCAGCuuaaaacgaaugcugAACGGUa -3'
miRNA:   3'- gaaAAUUGUGGU---UGCG-GUUG---------------UUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 66903 0.75 0.956228
Target:  5'- uUUUUGGCGCCAACuuuGCCAGCAcacuuuuuuuGCcgGGCg -3'
miRNA:   3'- gAAAAUUGUGGUUG---CGGUUGU----------UG--CCG- -5'
11182 5' -45.4 NC_002816.1 + 67244 0.66 0.999964
Target:  5'- ---gUggUGCUggUGcCCAGCAACGGa -3'
miRNA:   3'- gaaaAuuGUGGuuGC-GGUUGUUGCCg -5'
11182 5' -45.4 NC_002816.1 + 67860 0.68 0.999582
Target:  5'- aCUUgu--CACCaAACGCCuuCGcCGGCu -3'
miRNA:   3'- -GAAaauuGUGG-UUGCGGuuGUuGCCG- -5'
11182 5' -45.4 NC_002816.1 + 73334 0.67 0.999883
Target:  5'- ----cAGCACCAggauggauucgGCGCgaugCAACuACGGCa -3'
miRNA:   3'- gaaaaUUGUGGU-----------UGCG----GUUGuUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 73538 0.66 0.999934
Target:  5'- -gUUgcACACCAACGCCuuaAACGu- -3'
miRNA:   3'- gaAAauUGUGGUUGCGGuugUUGCcg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.