miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11182 5' -45.4 NC_002816.1 + 26894 0.68 0.999671
Target:  5'- ----cGACAauuCCAACGCCGAC--UGGUa -3'
miRNA:   3'- gaaaaUUGU---GGUUGCGGUUGuuGCCG- -5'
11182 5' -45.4 NC_002816.1 + 27293 0.75 0.946894
Target:  5'- ----cGACACCAgauauggACGCCGGCAGCGa- -3'
miRNA:   3'- gaaaaUUGUGGU-------UGCGGUUGUUGCcg -5'
11182 5' -45.4 NC_002816.1 + 30354 0.69 0.99875
Target:  5'- ----gGACugCGACGCCGuCAACGu- -3'
miRNA:   3'- gaaaaUUGugGUUGCGGUuGUUGCcg -5'
11182 5' -45.4 NC_002816.1 + 30400 0.66 0.999981
Target:  5'- ---cUAACACCAccAUGCCcACAAUGa- -3'
miRNA:   3'- gaaaAUUGUGGU--UGCGGuUGUUGCcg -5'
11182 5' -45.4 NC_002816.1 + 31775 0.78 0.870643
Target:  5'- ----cAACGgCAACaCCAGCGACGGCa -3'
miRNA:   3'- gaaaaUUGUgGUUGcGGUUGUUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 32379 0.66 0.999964
Target:  5'- ----cGGCGgUGAUGUCGcGCAACGGCa -3'
miRNA:   3'- gaaaaUUGUgGUUGCGGU-UGUUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 32894 0.66 0.999974
Target:  5'- ---gUGGCACaUggUGCCGAaguCGGCGGUg -3'
miRNA:   3'- gaaaAUUGUG-GuuGCGGUU---GUUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 33049 0.69 0.999178
Target:  5'- -------gACCAGCaccGCCGACuuCGGCa -3'
miRNA:   3'- gaaaauugUGGUUG---CGGUUGuuGCCG- -5'
11182 5' -45.4 NC_002816.1 + 33285 0.68 0.999671
Target:  5'- --aUUAcCACCAACGCCAccACAAUa-- -3'
miRNA:   3'- gaaAAUuGUGGUUGCGGU--UGUUGccg -5'
11182 5' -45.4 NC_002816.1 + 34760 0.69 0.998962
Target:  5'- ----cGGCGCgGGCGCaCAcacaacuuguugaACGACGGCu -3'
miRNA:   3'- gaaaaUUGUGgUUGCG-GU-------------UGUUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 35879 0.7 0.997315
Target:  5'- --cUUAAaaaguGCGCCAGCGugGGCa -3'
miRNA:   3'- gaaAAUUgugguUGCGGUUGUugCCG- -5'
11182 5' -45.4 NC_002816.1 + 36460 0.67 0.999883
Target:  5'- ----cAACACCcuggauGAUGUCAuauGCGACGGUg -3'
miRNA:   3'- gaaaaUUGUGG------UUGCGGU---UGUUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 37838 0.75 0.94252
Target:  5'- --gUUGACACaggaccaAGCGCCcaccGACAAUGGCa -3'
miRNA:   3'- gaaAAUUGUGg------UUGCGG----UUGUUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 38233 0.67 0.999883
Target:  5'- ----cAGCACCAAU-UCGACGugGGUg -3'
miRNA:   3'- gaaaaUUGUGGUUGcGGUUGUugCCG- -5'
11182 5' -45.4 NC_002816.1 + 38648 0.7 0.998147
Target:  5'- ---cUAAC-UgAACGCCAACAaaaacuguACGGCg -3'
miRNA:   3'- gaaaAUUGuGgUUGCGGUUGU--------UGCCG- -5'
11182 5' -45.4 NC_002816.1 + 39544 0.66 0.999934
Target:  5'- ----aAACACCGGCaCCuuugacugcACAGCGGUg -3'
miRNA:   3'- gaaaaUUGUGGUUGcGGu--------UGUUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 39606 0.66 0.999981
Target:  5'- -------uGCCAGCGCac-CGugGGCa -3'
miRNA:   3'- gaaaauugUGGUUGCGguuGUugCCG- -5'
11182 5' -45.4 NC_002816.1 + 45883 0.66 0.999974
Target:  5'- ----gGACACUGua-CCGGCGACGGUg -3'
miRNA:   3'- gaaaaUUGUGGUugcGGUUGUUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 46128 0.7 0.997315
Target:  5'- cCUUgu-GCACCGugGUCAGuu-CGGCg -3'
miRNA:   3'- -GAAaauUGUGGUugCGGUUguuGCCG- -5'
11182 5' -45.4 NC_002816.1 + 48655 0.74 0.967522
Target:  5'- ---aUAAUACCAGCGCCuACAAUGa- -3'
miRNA:   3'- gaaaAUUGUGGUUGCGGuUGUUGCcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.