miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11182 5' -45.4 NC_002816.1 + 49217 0.71 0.992803
Target:  5'- --gUUGACACCGugGUUAugAA-GGCg -3'
miRNA:   3'- gaaAAUUGUGGUugCGGUugUUgCCG- -5'
11182 5' -45.4 NC_002816.1 + 87024 0.71 0.993818
Target:  5'- ----cAAUGCCAcCGCCAACAAUaGCa -3'
miRNA:   3'- gaaaaUUGUGGUuGCGGUUGUUGcCG- -5'
11182 5' -45.4 NC_002816.1 + 1888 0.71 0.994716
Target:  5'- -gUUUGACAUCAACGagGACAACGa- -3'
miRNA:   3'- gaAAAUUGUGGUUGCggUUGUUGCcg -5'
11182 5' -45.4 NC_002816.1 + 101313 0.71 0.995504
Target:  5'- -------uGCCGaguucgguucauACGCCGACAugGGCc -3'
miRNA:   3'- gaaaauugUGGU------------UGCGGUUGUugCCG- -5'
11182 5' -45.4 NC_002816.1 + 110263 0.71 0.995504
Target:  5'- aCUUUUucGACAaCGACGCCcaaGugGACGGUa -3'
miRNA:   3'- -GAAAA--UUGUgGUUGCGG---UugUUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 6858 0.71 0.995504
Target:  5'- --gUUGACG--AGCGCCAuCAGCGGUg -3'
miRNA:   3'- gaaAAUUGUggUUGCGGUuGUUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 61828 0.71 0.995504
Target:  5'- ----cGACACCAuCGagagaCAGCAcaGCGGCa -3'
miRNA:   3'- gaaaaUUGUGGUuGCg----GUUGU--UGCCG- -5'
11182 5' -45.4 NC_002816.1 + 83481 0.7 0.996795
Target:  5'- ---gUGACACCGGCgauuuuauuGCCGACAA-GGUg -3'
miRNA:   3'- gaaaAUUGUGGUUG---------CGGUUGUUgCCG- -5'
11182 5' -45.4 NC_002816.1 + 46128 0.7 0.997315
Target:  5'- cCUUgu-GCACCGugGUCAGuu-CGGCg -3'
miRNA:   3'- -GAAaauUGUGGUugCGGUUguuGCCG- -5'
11182 5' -45.4 NC_002816.1 + 35879 0.7 0.997315
Target:  5'- --cUUAAaaaguGCGCCAGCGugGGCa -3'
miRNA:   3'- gaaAAUUgugguUGCGGUUGUugCCG- -5'
11182 5' -45.4 NC_002816.1 + 48712 0.7 0.997315
Target:  5'- ----cAACACCcAUGCCGGCGaucAUGGUg -3'
miRNA:   3'- gaaaaUUGUGGuUGCGGUUGU---UGCCG- -5'
11182 5' -45.4 NC_002816.1 + 105703 0.7 0.997763
Target:  5'- -----uACACCGuuCGCCugacCGGCGGCa -3'
miRNA:   3'- gaaaauUGUGGUu-GCGGuu--GUUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 111859 0.7 0.998147
Target:  5'- ----gAGCACguccacgguguaCAAUGCCAGCAACaGCa -3'
miRNA:   3'- gaaaaUUGUG------------GUUGCGGUUGUUGcCG- -5'
11182 5' -45.4 NC_002816.1 + 63067 0.7 0.998147
Target:  5'- -------uGCCGACGCCGAUuguaGGCg -3'
miRNA:   3'- gaaaauugUGGUUGCGGUUGuug-CCG- -5'
11182 5' -45.4 NC_002816.1 + 38648 0.7 0.998147
Target:  5'- ---cUAAC-UgAACGCCAACAaaaacuguACGGCg -3'
miRNA:   3'- gaaaAUUGuGgUUGCGGUUGU--------UGCCG- -5'
11182 5' -45.4 NC_002816.1 + 86161 0.69 0.998412
Target:  5'- ----cGACACCGaauugauagaguauuACGCCAaucuggagaagaaguACGGCGGUg -3'
miRNA:   3'- gaaaaUUGUGGU---------------UGCGGU---------------UGUUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 92878 0.69 0.998474
Target:  5'- aCUg--GACACCGcCGCCAGCuacuaucuaaaaGugGGUa -3'
miRNA:   3'- -GAaaaUUGUGGUuGCGGUUG------------UugCCG- -5'
11182 5' -45.4 NC_002816.1 + 14136 0.69 0.998474
Target:  5'- ---cUGACACCAACGCCGAUc----- -3'
miRNA:   3'- gaaaAUUGUGGUUGCGGUUGuugccg -5'
11182 5' -45.4 NC_002816.1 + 50376 0.69 0.998474
Target:  5'- ----gGACcCCGcucuCGCCGcucGCGACGGCa -3'
miRNA:   3'- gaaaaUUGuGGUu---GCGGU---UGUUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 115336 0.69 0.998474
Target:  5'- -----uACGCCAAagauuacauUGUgGACAGCGGCa -3'
miRNA:   3'- gaaaauUGUGGUU---------GCGgUUGUUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.